Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) AT3G15690 187 / 1e-58 Single hybrid motif superfamily protein (.1.2) AT3G56130 146 / 2e-42 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT5G16390 47 / 6e-06 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023118 [exp] 465 / 1e-167 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2) Lus10040959 [exp] 140 / 4e-39 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10009843 [exp] 138 / 4e-39 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10010226 [exp] 128 / 1e-35 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10017424 [exp] 127 / 4e-35 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172600 [exp] 229 / 5e-75 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.003G061400 [exp] 227 / 2e-73 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2) Potri.008G074100 [exp] 134 / 4e-38 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 127 / 2e-35 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.004G119000 [exp] 42 / 0.0002 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10011480 pacid=23182619 polypeptide=Lus10011480 locus=Lus10011480.g ID=Lus10011480.BGIv1.0 annot-version=v1.0 ATGATGGGTAGTCTTGGAGTTTTTAACTTCAAAGTCGTAACCATAGACATTGTTGGACAAAAGGATATCACTCCAAGCCGACGGAGCTACGTGCAGAAAT CGGTCAAGATGAGGCCTTTACAGTATGCTCCTCTCCCGGTGTCGTCGAAAGCATTTAGAATAAGCAGCAAGTTATCTGTTGGAGCAGACTCAGTTGACAA CTCAGAAGCGTCCAAGTCACCAGTCAAGCCAAGCTACCGTATTCAGAACTTATCTGAGATTGAATCTCTGGTCTCCGAAATTTGCGACACAGACTCCATT GCGGAAGTCGAGTTAAAACTAGGCGCATTTGAGCTGTCCGTGACTAGAGACTTGTCCAGGAATAAAGCTGAATCGCCTAGTGATCCTCGAGCTGATGTGC CTTCACCACCTGCTACTTCGAATATGGATACAGATGCTTCAAATGGACCTGTTACCAGTACAGCATTGGTGGGACCATCATCGGAACGAATCAGGCCTTT CCTCGATCGAGCTGTCGACGAAGGTTTCGTGATAGTGAAGTCACCAAGGGTCGGTACGTTCCAAAGATCTCGAACTACGAAGAAGAAGAAACGCGGACCG GATGCATGTAAAGAGAAGCAAATTGTGAGAGAGGGTCAGGTCCTATGCTACATTCACCAGCTCGGAGGCGAACTTCCTGTTCAGACTGATGTCTCTGGTG AGGTAATCAGAATACTAAAGCAGGAAGGAGATCCTGTTGGATATGGAGATCCTCTGATAGCAATACTTCCTTCATTTCCTGGAATCAAGAAACTTAAGTA G
AA sequence Show only first row Show all	>Lus10011480 pacid=23182619 polypeptide=Lus10011480 locus=Lus10011480.g ID=Lus10011480.BGIv1.0 annot-version=v1.0 MMGSLGVFNFKVVTIDIVGQKDITPSRRSYVQKSVKMRPLQYAPLPVSSKAFRISSKLSVGADSVDNSEASKSPVKPSYRIQNLSEIESLVSEICDTDSI AEVELKLGAFELSVTRDLSRNKAESPSDPRADVPSPPATSNMDTDASNGPVTSTALVGPSSERIRPFLDRAVDEGFVIVKSPRVGTFQRSRTTKKKKRGP DACKEKQIVREGQVLCYIHQLGGELPVQTDVSGEVIRILKQEGDPVGYGDPLIAILPSFPGIKKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	0	1
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	3.7	0.9200
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	4.0	0.9056
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	4.2	0.9153
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	7.0	0.8966
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	8.1	0.8899
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	16.9	0.8806
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	17.1	0.8789
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	18.7	0.9064
AT2G17695			unknown protein		Lus10041839 [exp]	23.6	0.8885
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	23.7	0.8934

Compare expression of checked genes

Lus10011480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.