Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15750 1943 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1937 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1610 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1375 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1330 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 232 / 5e-64 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 61 / 1e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 59 / 1e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G67320 58 / 3e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G61210 56 / 2e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023119 [exp] 2178 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1673 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10029876 [exp] 1343 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1340 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 1059 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 1021 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 894 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10011905 [exp] 875 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001924 [exp] 728 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030000 [exp] 2058 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1993 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1663 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1655 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1519 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 1458 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1436 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 1384 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1354 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 1226 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011481 pacid=23182656 polypeptide=Lus10011481 locus=Lus10011481.g ID=Lus10011481.BGIv1.0 annot-version=v1.0 ATGTTGAGCTCTCCCGTACCAGTTGCTATGGAGGCTGATCTATCTAGCGCTAATTTTGGAGATAGGGAGGAATCTGGTAGCGAATACGGCGCAGTTAAGA TGTCATCTCTCAGTAGAGAGCTGGTCTTCCTGATCTTGCAGTTCCTTGATGAAGAGAAGTTCAAGGAGACTGTCCACAAGCTTGAGCAGGAATCTGGGTT TTACTTCAACATGAAGTATTTCGAGGATGAAGTGCATAGCGGGAACTGGGATGAGGTCGAGAAGTATCTCTCTGGGTTCACCAAGGTCGATGACAATCGT TATTCAATGAAAATATTTTTCGAGATAAGGAAACAGAAGTACCTTGAAGCATTGGATAAGCATGACCGGTCCAAGGCAGTGGATATACTGGTTAAGGATT TGAAAGTGTTTGCCACATTTAACGAGGAGCTTTTCAAGGAGATCACTCAGTTGTTGACGTTGGAGAATTTTAGGGAGAATGAGCAACTATCCAAGTATGG GGATACAAAATCTGCAAGAGCAATTATGTTGGTGGAGCTCAAGAAGCTTATTGAAGCAAATCCTTTGTTTCGTGATAAATTGCAGTTTCCAAACCTGAAA AATTCGAGGCTAAGGACACTCATAAATCAAAGCTTGAACTGGCAACACCAACTTTGTAAAAATCCGAGGCCAAATCCAGATATAAAAACTCTGTTTGTGG ATCATTCATGTGGGCAAACGAATGGTGCTCGAGCTCCATCACCAGCAAATAATGCATTACTTGGGGCATTGCCAAAAGCTGGAGGGTTTCCTCCTCTGGG TGCTCATGGGCCATTCCAGCCTACACCCGCAGCTGTTCCAGCACCCCTTGCAGGTTGGATGTCTAATCCTTCTGTTGCTCATCCATCTGTTTCTGGAGGA GCTGCCATCGGTCTTGGAACTTCATCAATTCCAGCGGCTCTGAAGCACCCTAGGACACCCCCTACTAACCCATCTGTGGATTATCCATCCGGAGATCCTG ACCATGTTGCAAAGCGAACAAGGCCTATGGGAATAACTGATGAGGTCAATTTGCCGGTCAATGTTATGCCAGTATCCTTTCCTGGACATGGTCACAGTCC AGCTTATAATACACCAGATGACTTGCCCAAGGTAGTATCACGGAGTCTGAATCAGGGATCATCTCCTATGAGTATGGATTTCCATCCTGCTCAGCAGACC CTTCTTTTAGTTGGCACTAATGTGGGGGACATTGGTTTGTGGGAAGTTGGTTCGAGAGAGCGGCTGGTTTTAAGAAACTTCAAGGTCTGGGATTTAAGCG CATGTTCTATGCCTCTACAGTCAGCTCTTGTCAAGGATCCTGCTGTTTCTGTTAACCGTGTGATTTGGAGCCCTGATGGCAACTTGTTTGGAGTTGCATA TTCCAGGCACATTGTGCAGATATATTCTTATCACGGAGGTGATGATGTAAGACAACACTTGGAGATTGATGCTCATGTTGGCGGCGTAAATGATATTGCA TTTTCCACCCCAAATAAGCAGCTTTGTGTAATTACCTGTGGAGACGACAAGACAATTAAGGTGTGGGATGCTGGTACTGGTGCAAGACAATATACCTTTG AAGGTCATGAGGCTCCTGTATATTCTGTCTGCCCTCACTATAAAGAGAATATTCAGTTTATCTTCTCTACTGCCCTTGATGGAAAGATAAAAGCCTGGTT ATATGATAATTTGGGATCCCGAGTAGATTATGAAGCTCCGGGTCGGTGGTGCACAACTATGGCTTACAGTGCTGATGGTACAAGGTTATTTTCTTGTGGA ACGAGCAAAGATGGTGAGTCATATATTGTGGAGTGGAATGAGAGTGAAGGTGCTGTCAAGAAGCACTACCAGGGTTTCCGGAAGCGGTCTCTGGGTGTTG TTCAATTTGATACAATGAAGAACAGATATTTGGCTGCTGGTGATGAATTCGTAATCAAGTTCTGGGATATGGATAATGTCCAGCTTTTGACTTCAATAGA TGCTGATGGAGGACTTCCGGCAAGCCCCCGGATCCGCTTCAATAAAGATGGCACACTTTTAGCTGTCTCTGGCAATGACAATGTGATAAAGGTGTTGGCC AATAATGATGGTACTAGGTTGTTGCGCACGTTTGAAAATCTTTCATACGATACATCACGAGCATCTGAAGCTGTATCAAAGCCTGCAATAAGCCCAATCT CAGCAGCTGCAGCAGCAGCAGCTGCTGCTGCAACAAGTACTAGTGCTGGACTTGCTGAAAGGGCTAACTCTGCTGTCAACATTTCTGGCATGAATGGAGA TGCACGGAACTTGGGAGATGTTAAGCCTAGAATAGCAGAAGAATCCAACGACAAGTCAAAGATTTGGAAACTTACAGAAATAAATGAACCGACTCAATGT CGGACCTTGAGGCTCCCAGAAAACTTGAGAGTAACAAAGATATCAAGGTTAATTTATACCAATTCAGGCAATGCTATTCTGGCATTAGCATCTAATGCAA TTCATTTGTTATGGAAATGGCAACGAAGTGACCGCAATTCTACTGGGAAGGTTACTGCTGGTGTATCACCTCAACTATGGCAACCATCTAGCGGCATTTT GATGACCAATGACGTGACTGACACTAACCCTGAAGATTCAGTATCCTGCTTTGCTTTGTCCAAAAATGATTCTTACGTTATGTCAGCATCCGGTGGCAAG ATTTCTCTGTTCAATATGATGACATTCAAGACCATGACAACTTTCATGCCTCCACCACCGGCTGCAACGTTTCTTGCTTTTCATCCTCAAGATAACAATA TTATTGCTATTGGGATGGATGATTCCACAATTCAGATATATAACGTTCGTGTGGATGAGGTAAAAAGCAAGCTGAAAGGACATTCTAAGAGAATAACTGG CCTTGCATTCTCCCACGTGCTGAATGTGCTAGTTTCATCAGGAGCAGATGCCCAGATTTGTGTATGGAGTTCGGATGGATGGGAGAAGCAAAAGGCGAGA TTATTACAAGTCCCGGCTGGAAGGCCAGCGACAGCACAGTCAGACACTCGTGTGCAATTTCATCAGGACCAAACTCACTTCCTTGTTGTACACGAAACCC AGCTTGCCATCTATGAAGCTTCGAAACTTGAATGTGTAAAACAGTGGCTCCCACGTGAACCTTCTGCCCCAATATCTCATGCAACATTCTCATGTGATAG TCAGCTGGTATATGCTAGCTTTTTGGATGCTAGTATCTGTGTGTTTAGTGCTGCAAATCTCAGACTACGTTGTCGTATCAATCCTTCGGCTTATCTTCCG GCAAACGTCAGTGTCCCTAATGTGCACCCACTTGTAATCGCTGCACACCCACAAGAACCGAATCAGTTTGCCATCGGGCTATCAGATGGCGGGGTTCATG TTTTCGAACCCGTTGAATCCGAAGGCAAATGGGGTGTCCCTCCACCACCCGAGAATGGGTCGGCGAGCAGTGCTACAGCAACGCCATCAGTGGGGGCCTC GGGTTCAGAACAAGCTCAGAGATGA
AA sequence Show only first row Show all	>Lus10011481 pacid=23182656 polypeptide=Lus10011481 locus=Lus10011481.g ID=Lus10011481.BGIv1.0 annot-version=v1.0 MLSSPVPVAMEADLSSANFGDREESGSEYGAVKMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVHSGNWDEVEKYLSGFTKVDDNR YSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLK NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQTNGARAPSPANNALLGALPKAGGFPPLGAHGPFQPTPAAVPAPLAGWMSNPSVAHPSVSGG AAIGLGTSSIPAALKHPRTPPTNPSVDYPSGDPDHVAKRTRPMGITDEVNLPVNVMPVSFPGHGHSPAYNTPDDLPKVVSRSLNQGSSPMSMDFHPAQQT LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLSACSMPLQSALVKDPAVSVNRVIWSPDGNLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDIA FSTPNKQLCVITCGDDKTIKVWDAGTGARQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCG TSKDGESYIVEWNESEGAVKKHYQGFRKRSLGVVQFDTMKNRYLAAGDEFVIKFWDMDNVQLLTSIDADGGLPASPRIRFNKDGTLLAVSGNDNVIKVLA NNDGTRLLRTFENLSYDTSRASEAVSKPAISPISAAAAAAAAAATSTSAGLAERANSAVNISGMNGDARNLGDVKPRIAEESNDKSKIWKLTEINEPTQC RTLRLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKVTAGVSPQLWQPSSGILMTNDVTDTNPEDSVSCFALSKNDSYVMSASGGK ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQICVWSSDGWEKQKAR LLQVPAGRPATAQSDTRVQFHQDQTHFLVVHETQLAIYEASKLECVKQWLPREPSAPISHATFSCDSQLVYASFLDASICVFSAANLRLRCRINPSAYLP ANVSVPNVHPLVIAAHPQEPNQFAIGLSDGGVHVFEPVESEGKWGVPPPPENGSASSATATPSVGASGSEQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	1.4	0.9303
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	1.7	0.9243
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	2.0	0.9364
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	2.8	0.9174
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	7.9	0.8832
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	9.2	0.9102
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	11.2	0.8859
AT1G50710			unknown protein		Lus10043109 [exp]	12.0	0.8779
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	12.2	0.8737
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	13.0	0.8951

Compare expression of checked genes

Lus10011481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.