Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15800 514 / 0 Glycosyl hydrolase superfamily protein (.1) AT2G26600 436 / 8e-152 Glycosyl hydrolase superfamily protein (.1.2) AT1G32860 333 / 3e-111 Glycosyl hydrolase superfamily protein (.1) AT2G27500 323 / 1e-107 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 320 / 3e-106 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 314 / 3e-104 Glycosyl hydrolase superfamily protein (.1) AT2G16230 312 / 6e-102 O-Glycosyl hydrolases family 17 protein (.1) AT1G30080 303 / 1e-99 Glycosyl hydrolase superfamily protein (.1) AT4G26830 299 / 2e-97 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 298 / 1e-96 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023120 [exp] 525 / 0 AT3G15800 409 / 1e-143 Glycosyl hydrolase superfamily protein (.1) Lus10038099 [exp] 458 / 4e-160 AT2G26600 547 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Lus10006659 [exp] 365 / 2e-125 AT2G26600 437 / 5e-156 Glycosyl hydrolase superfamily protein (.1.2) Lus10001660 [exp] 330 / 1e-110 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 325 / 1e-108 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 323 / 5e-108 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 324 / 8e-108 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 323 / 2e-107 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10033244 [exp] 323 / 2e-107 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032600 [exp] 556 / 0 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 542 / 0 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.018G129500 [exp] 469 / 5e-165 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.006G067500 [exp] 470 / 1e-164 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.011G152400 [exp] 347 / 1e-116 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 346 / 3e-116 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 337 / 3e-113 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 337 / 9e-113 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G202400 [exp] 330 / 1e-110 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G132700 [exp] 327 / 5e-109 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10011482 pacid=23182636 polypeptide=Lus10011482 locus=Lus10011482.g ID=Lus10011482.BGIv1.0 annot-version=v1.0 ATGGAATCCTATTTCCTTGGCAATTCATCCTCCAGATCATCATTGTTTATGATGGCTTCCTCTAGTTCATTCATCAACTCTCTCAGCTTCAGGCTTTTCT TTCTCTTGTGTCTTCTATATTCCACCGGTCGTAGCATTACTCTGTTACGTGACGTGATATTGCTCTTTTCCTCTGCAGATTACTCGGCAGATGCGTTTAC AGGAACATACGGAGTGAACTACGGCAGGATAGCTGACAACTTACCGTCACCGCACAGTGTGGTTACCCTTCTGAAAGCTGCAAAGATAAAGAACGTCAGA ATCTATGACACCGATAGTCAGGTTCTCTCTGCATTCAAAGGGTCCGGGCTTGAGCTAATCGTAGGCCTCGGTAACGAGTTCCTCAAGGACATCAGCCTGG GAGAGGACCGAGCCATGAACTGGATAAAAGAGAACGTGCAACCCTACTTACCGGGCACGAAAATCGTCGGGATCGCAGTTGGCAACGAGATCTTAGGCGG CACGGACATAGAACTATGGGAAGCATTGCTTCCTTCCGTTAGAAATGTCTATTCTGCCCTCCAGAGGCTCGGACTGCACGACAAGATCGAGATCTCGAGC CCCAACTCGGAAGCTGTTTTCACTAATTCGTTCCCTCCTTCGGCTTGCATCTTCAGGCCTGATGTTGAGGTCTTCATGGTTCCGCTGCTACAGTTCTTCT CGAGAATCGGGTCGCCGTTCTACATCAATGCCTACCCCTTTTTGGCGTACAAGAGCGACCCGGAACACATCGACCTCAAATACGCACTCTTCCAGCCCAA CTCCGGAATATGGGACTCTAAGACCAACCTACATTACGACAACATGTTTGATGCTCAGGTCGATGCAGCCTACGCAGCACTGGAGAAGGCTGGGTTCGGG AAGATGGAAGTGATAGTGTCGGAGACAGGTTGGGCATCGAACGGGGACCAAAATGAGGCCGGCGCGGACTTGCAGAACGCAAAGACGTACAACAAAAACC TGAAGAAGAGGCTGGCTAAGAAGAAAGGGACGCCTTACAGGCCAAAGAGTAAAGTTAGGGCATACGTGTTTGCTTTGTTCAACGAGAATCTGAAGCCAGG GCCAACCTCTGAGAGGAACTTTGGGCTATTTAAACCTGATGGCAGCATCGCTTACGACATCGGCTTCACTGGGCTCAAAGATTCTTCATCGTCTCGAGTT CGAGCTCGAGGGATGGTCGTCGTCCGTAAATGTTTGGTTTCTTTGCTGATTCTGGTTGGGCTGCTGAGTTCGATTTGGTGA
AA sequence Show only first row Show all	>Lus10011482 pacid=23182636 polypeptide=Lus10011482 locus=Lus10011482.g ID=Lus10011482.BGIv1.0 annot-version=v1.0 MESYFLGNSSSRSSLFMMASSSSFINSLSFRLFFLLCLLYSTGRSITLLRDVILLFSSADYSADAFTGTYGVNYGRIADNLPSPHSVVTLLKAAKIKNVR IYDTDSQVLSAFKGSGLELIVGLGNEFLKDISLGEDRAMNWIKENVQPYLPGTKIVGIAVGNEILGGTDIELWEALLPSVRNVYSALQRLGLHDKIEISS PNSEAVFTNSFPPSACIFRPDVEVFMVPLLQFFSRIGSPFYINAYPFLAYKSDPEHIDLKYALFQPNSGIWDSKTNLHYDNMFDAQVDAAYAALEKAGFG KMEVIVSETGWASNGDQNEAGADLQNAKTYNKNLKKRLAKKKGTPYRPKSKVRAYVFALFNENLKPGPTSERNFGLFKPDGSIAYDIGFTGLKDSSSSRV RARGMVVVRKCLVSLLILVGLLSSIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	0	1
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	3.2	0.9431
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	4.9	0.9407
AT3G15800			Glycosyl hydrolase superfamily...		Lus10023120 [exp]	4.9	0.9112
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	5.8	0.9412
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	8.2	0.9302
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	8.9	0.9059
AT5G46530			AWPM-19-like family protein (....		Lus10025374 [exp]	9.5	0.9023
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	9.7	0.9272
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	9.8	0.9184
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	10.8	0.9181

Compare expression of checked genes

Lus10011482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.