Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15710 253 / 3e-84 prephenate dehydrogenase family protein (.1) AT5G34930 231 / 9e-73 arogenate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023121 [exp] 384 / 1e-135 AT1G15710 483 / 8e-172 prephenate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201100 [exp] 301 / 5e-103 AT1G15710 469 / 2e-166 prephenate dehydrogenase family protein (.1) Potri.006G062600 [exp] 241 / 2e-76 AT5G34930 858 / 0.0 arogenate dehydrogenase (.1) Potri.008G074500 [exp] 142 / 4e-42 AT5G34930 295 / 5e-96 arogenate dehydrogenase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011483 pacid=23182577 polypeptide=Lus10011483 locus=Lus10011483.g ID=Lus10011483.BGIv1.0 annot-version=v1.0 ATGTTTGGCCCCGAGAGTGGGAAGCATTCTTGGTCAGGGTTGACGTTTATGTACGACAAGGTCCGGATCGGAAACGACGAGGATAGGATGTCTAGGTGTG CCAAATTCTTGGATAGCTTTGCTAAGGAAGGTTGCAGGATGGTGGAAATGAGCTGTGCCGAGCACGATCGGCATGCCGCTGGATCGCAGTTTGTGACGCA CACGTTAGGGAGAGTGCTGGAGAAGTATGGACTGGAGTCATCTCCGATCAACACTAAAGGGTATGAGACGCTGCTGAATTTGGTGGAGAACACCTCCGGG GATAGCTTCGAGCTGTATTACGGTCTGTTCATGTATAATCAGAATGCCATGGAGCAGCTGCAGAGGCTGGAGACTGCTTTTGAAGCTATTAAGATGGATT TGTTTGGGAAGTTGCATCAAGCTTATAGGAAGCAGTTGTTTGGGGATTCCGAAGTTGGTCGAGAGGAGCGGCCTAGGATTCAGAAACTGCTTCATAATGG CAATGGTTCTCCTCCTCCTTCCGGAAATGTTGTAAGCCAAGATTCGTTGAATTCTGGTTAG
AA sequence Show only first row Show all	>Lus10011483 pacid=23182577 polypeptide=Lus10011483 locus=Lus10011483.g ID=Lus10011483.BGIv1.0 annot-version=v1.0 MFGPESGKHSWSGLTFMYDKVRIGNDEDRMSRCAKFLDSFAKEGCRMVEMSCAEHDRHAAGSQFVTHTLGRVLEKYGLESSPINTKGYETLLNLVENTSG DSFELYYGLFMYNQNAMEQLQRLETAFEAIKMDLFGKLHQAYRKQLFGDSEVGREERPRIQKLLHNGNGSPPPSGNVVSQDSLNSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	0	1
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	1.0	0.9053
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	2.4	0.8999
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	4.2	0.8843
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	4.2	0.8975
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	4.5	0.8843
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	4.6	0.8840
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	8.4	0.8644
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	8.4	0.8719
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	8.7	0.8638
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	8.7	0.8429

Compare expression of checked genes

Lus10011483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.