Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80030 575 / 0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 345 / 2e-113 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 330 / 9e-109 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 327 / 2e-107 DNAJ heat shock family protein (.1) AT5G48030 181 / 2e-51 GFA2 gametophytic factor 2 (.1) AT1G28210 164 / 2e-45 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 139 / 2e-36 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 120 / 1e-29 ATJ3 DNAJ homologue 3 (.1.2) AT1G10350 96 / 2e-21 DNAJ heat shock family protein (.1) AT3G62600 92 / 2e-20 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023122 [exp] 855 / 0 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10000631 [exp] 337 / 3e-111 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 333 / 1e-109 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 334 / 2e-109 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 333 / 6e-109 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10035920 [exp] 314 / 3e-102 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 258 / 1e-81 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10011934 [exp] 192 / 2e-55 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 190 / 8e-55 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031800 [exp] 621 / 0 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 344 / 6e-113 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.005G073900 [exp] 338 / 7e-112 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 334 / 2e-110 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 194 / 3e-56 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 191 / 2e-55 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 173 / 3e-48 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.002G141100 [exp] 136 / 3e-35 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 126 / 1e-31 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 126 / 1e-31 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011484 pacid=23182616 polypeptide=Lus10011484 locus=Lus10011484.g ID=Lus10011484.BGIv1.0 annot-version=v1.0 ATGGCGACTGCTGCGGCGGCCACGACCTTCTCCTTACTCCCTTCTCTCAGCTGCCCTTCCCCCGCTTCCTTCTCTTCCTCGTCTACTCCTCAATCGTCGC CATTCTTTGCACATTTAGCTCATCATCGCAGTAGCCTTGGTTCAGCAACCTCGGCTTGCTCTTTCCCTCGCACTCTCAAGCTCAAGCGGAAGGCTCGCTA CGCCCCTGTGGTGGTCCGTGCTTCTGCCGATTACTACTCCACTCTCGGTGTTCCCAAGTCTGCTTCCGTTAAGGATATCAAAGCTGCGTATAGGAGATTA GCTCGCCAGTACCATCCTGATGTTAACAAGGAGCCTGGAGCAACTGATAAGTTTAAGGAGATTAGTGCTGCATATGAGGTACTTTCAGATGATAAAATGA GGGCTAGATATGATCAGTTTGGTGAAGCTGGAGTGAAGAGTACAGTTGGCGGACAATCAGATGCTTATACGACGGTGAATCCTTTTGATCTGTTTGAGAC ATTCTTTGGGTCAAATGTTGGTGGTTTTTCTGGCATGGACCAAACTGGCTTCAGGACAAGAGGTCGTAGTACAGTAAATAAGGGTGAAGACATAAGATAC GACATCAGTTTAGAATTTTCCGAGGCTATTTTTGGAGCTGAGAAGGAATTTGAGCTATCTCATTTGGAAACATGTGAAGCTTGCACTGGCACTGGAGCCA AGATTGGGTCCAAGAAGAGGATATGCTCAACTTGTGGAGGCAGAGGTCAAGTTATGAGAACTGAACAAACCCCTTTTGGCCTGTTCTCACAGGTTTCTGT CTGTCCTAATTGTGGTGGGGACGGGGAGGTCATCTCTGAATATTGTCGAAAATGTTCTGGAGAAGGACGTTTACGTACTAAAAAAAACATCAAAGTCAAA GTGCCTCCTGGGGTTACCTCGGGCAGTATTCTCAGAGTTGCTGGAGAAGGTGATGCTGGACCAAGAGGTGGTCCTGCGGGGGATCTTTATGTGTATCTCA ACGTTAAAGAGATAAGTGGAATCCAAAGAGATGGAATAACTCTCAGATCAACCATATCAATCAGCTATGTTGATGCAATTCTTGGAACCGTTGTCAAGGT AAATACAGTTGATGGTGAAAGTGAACTTAAAATCCCTTCTGGTACTCAACCAGGGGATGTACTAGTCCTGTCGAAGAAAGGGGCACCTAAGCTGAATAAA CCATCCATACGCGGCGATCACTTGTTTTCAGTTAAAGTCGGGATACCAAAAAGAATAAGTGCTCAAGAACGTGAATTGCTTGAAGAACTTGCTTCTCTGA GTAATACCACTGCCGCTCGATCATCACCTAAGCCCAAGCCTCAGTCTCCAACAAGAACAGATGTTAAAGAGGAGAGGGCCACAGAACAAGCCGGTGAAGG AGGAGAGCAGAGCGACGTCTGGAAGCAACTAAAAGATCTAGCAGGGGCTGCTGTGAATGGGGCTATGAAATGGCTGAAGAACAACCTTTGA
AA sequence Show only first row Show all	>Lus10011484 pacid=23182616 polypeptide=Lus10011484 locus=Lus10011484.g ID=Lus10011484.BGIv1.0 annot-version=v1.0 MATAAAATTFSLLPSLSCPSPASFSSSSTPQSSPFFAHLAHHRSSLGSATSACSFPRTLKLKRKARYAPVVVRASADYYSTLGVPKSASVKDIKAAYRRL ARQYHPDVNKEPGATDKFKEISAAYEVLSDDKMRARYDQFGEAGVKSTVGGQSDAYTTVNPFDLFETFFGSNVGGFSGMDQTGFRTRGRSTVNKGEDIRY DISLEFSEAIFGAEKEFELSHLETCEACTGTGAKIGSKKRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRLRTKKNIKVK VPPGVTSGSILRVAGEGDAGPRGGPAGDLYVYLNVKEISGIQRDGITLRSTISISYVDAILGTVVKVNTVDGESELKIPSGTQPGDVLVLSKKGAPKLNK PSIRGDHLFSVKVGIPKRISAQERELLEELASLSNTTAARSSPKPKPQSPTRTDVKEERATEQAGEGGEQSDVWKQLKDLAGAAVNGAMKWLKNNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	0	1
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	1.0	0.9508
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	2.0	0.9188
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	5.9	0.8824
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	8.4	0.8790
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020579 [exp]	8.5	0.8811
AT3G51510			unknown protein		Lus10033303 [exp]	10.2	0.8932
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	11.1	0.8871
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	14.7	0.8818
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10013423 [exp]	15.4	0.8214
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	19.7	0.8395

Compare expression of checked genes

Lus10011484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.