Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15900 57 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023126 [exp] 141 / 1e-43 AT3G15900 62 / 1e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202000 [exp] 61 / 3e-12 AT3G15900 50 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011486 pacid=23182647 polypeptide=Lus10011486 locus=Lus10011486.g ID=Lus10011486.BGIv1.0 annot-version=v1.0 ATGACACTCACAACCACCGGGACTGTTTCCGCGACGGCCGCCGTCCGCTTTGCAAGTCCCCAAATCAAGATCGGTACAGCAAGTAGCAATGCTTCGAGCA CCGTCCGGTTTGGGTGGTTGTCCGGGCCGGAGCCGTTGGTTAAAATTTCCGGCCGATTCCGAGTGGGCCGCAGCCGCCGTGGTGAATCCGAAGCTAGTGG CGGCTCAACTTCTGGCTTCTTTCAGGGAGATGTAAGGGATGATTTAGGGTTCTTGGCGAAACTCGGGGGAGGTTCATTCGTGGGAGCAGCTGCAATCAAG TATGGAAGCATAGTGTTCCCTGAGATCACCAGACCAAACCTCTCTCAGGCACTGCTTATGATCTCACTTCCAGTTGTTCTATCTCTTCTCATTCTTTTCG TCTACCGATCTCCACCTCCTCCTCCCGGTGAAAGATGA
AA sequence Show only first row Show all	>Lus10011486 pacid=23182647 polypeptide=Lus10011486 locus=Lus10011486.g ID=Lus10011486.BGIv1.0 annot-version=v1.0 MTLTTTGTVSATAAVRFASPQIKIGTASSNASSTVRFGWLSGPEPLVKISGRFRVGRSRRGESEASGGSTSGFFQGDVRDDLGFLAKLGGGSFVGAAAIK YGSIVFPEITRPNLSQALLMISLPVVLSLLILFVYRSPPPPPGER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15900			unknown protein		Lus10011486 [exp]	0	1
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	2.6	0.9357
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	2.8	0.9351
AT3G51510			unknown protein		Lus10033303 [exp]	4.9	0.9226
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	5.9	0.9205
AT5G52960			unknown protein		Lus10039319 [exp]	7.1	0.9146
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	8.1	0.9208
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	10.5	0.9211
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	11.0	0.9017
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	11.7	0.9219
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	13.0	0.9067

Compare expression of checked genes

Lus10011486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.