Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80100 194 / 6e-64 AHP6 histidine phosphotransfer protein 6 (.1.2) AT5G39340 103 / 3e-28 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G03430 102 / 1e-27 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G29350 99 / 4e-26 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G21510 98 / 5e-26 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G16360 81 / 2e-19 AHP4 HPT phosphotransmitter 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023127 [exp] 258 / 5e-89 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10012777 [exp] 109 / 2e-30 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 109 / 2e-30 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 88 / 7e-22 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10038280 [exp] 83 / 3e-20 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 82 / 1e-19 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10035596 [exp] 77 / 4e-18 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10003256 [exp] 77 / 8e-18 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10002256 [exp] 76 / 8e-18 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032400 [exp] 212 / 9e-71 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.001G191900 [exp] 212 / 1e-70 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.016G113500 [exp] 109 / 2e-30 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 109 / 2e-30 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 109 / 2e-30 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.008G197600 [exp] 107 / 8e-30 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 107 / 1e-29 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 105 / 8e-29 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.005G040400 [exp] 104 / 2e-28 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.001G189900 [exp] 85 / 5e-21 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10011487 pacid=23182627 polypeptide=Lus10011487 locus=Lus10011487.g ID=Lus10011487.BGIv1.0 annot-version=v1.0 ATGCATTCATACATTGCACAGTGCGCCGAGCACGGTAGAATGCGCGACACACTAGGGATATCAAGCTCAGCCAAAACGGGTTTACCAGTGTGGATCTTGC TGGGTTTCGGGGCGGACCGACTTCTCGCCGATATGAACCGTTTACTCTCCCTCCTCTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTGCAGCA GCTCGAAGACGAGAGCTCCCCGAACTTCATATCGGAAGTAGTCAACATCTACTTCCATGAGTCCGAGAAGCTCCTCACTTCCCTCCGCCGACTCCTGATG GAGGGGGAGGAATCGGAGGGTTGTGACTATGGGAAGATAGGGATACATTTGAATCAGTTTATGGGGAGTAGCTCAAGCATTGGTGCTAAGAGGGTGAGGA ATGTTTGCCTCGCTTTTCAATCCGCTTCTGACCGAACCAATAGACATGGGTGTTTGAGAGCTCTAGAGGTGTTGGAGCATGAGTATTGCTACCTCAAGAA CAAGTTACATGAACTCTTCCAATTAGAGCAGCAGAGAGTGCTGGCAGCTGGAGTGAGGTACCCAATGCAGCATCATCACCAGAACACCAACATCAACATC AACAGCTAA
AA sequence Show only first row Show all	>Lus10011487 pacid=23182627 polypeptide=Lus10011487 locus=Lus10011487.g ID=Lus10011487.BGIv1.0 annot-version=v1.0 MHSYIAQCAEHGRMRDTLGISSSAKTGLPVWILLGFGADRLLADMNRLLSLLFHQGVLDEQFLQLQQLEDESSPNFISEVVNIYFHESEKLLTSLRRLLM EGEESEGCDYGKIGIHLNQFMGSSSSIGAKRVRNVCLAFQSASDRTNRHGCLRALEVLEHEYCYLKNKLHELFQLEQQRVLAAGVRYPMQHHHQNTNINI NS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	0	1
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	1.4	0.8419
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	3.5	0.8410
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	4.6	0.8324
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	8.4	0.7886
					Lus10017083 [exp]	8.7	0.6848
AT3G49645			unknown protein		Lus10027884 [exp]	12.1	0.7030
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	15.5	0.7420
AT1G72020			unknown protein		Lus10006080 [exp]	19.0	0.7407
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	21.0	0.7672
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	23.4	0.7270

Compare expression of checked genes

Lus10011487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.