Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 424 / 3e-148 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 345 / 2e-118 ADS1 delta 9 desaturase 1 (.1) AT3G15870 333 / 1e-112 Fatty acid desaturase family protein (.1) AT2G31360 326 / 1e-110 ADS2 16:0delta9 desaturase 2 (.1) AT1G06120 315 / 2e-106 Fatty acid desaturase family protein (.1) AT1G06100 313 / 7e-106 Fatty acid desaturase family protein (.1) AT1G06090 312 / 2e-105 Fatty acid desaturase family protein (.1) AT1G06350 306 / 4e-103 Fatty acid desaturase family protein (.1) AT1G06360 295 / 7e-99 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023128 [exp] 586 / 0 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 362 / 2e-124 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 356 / 2e-122 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 355 / 6e-122 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 348 / 5e-119 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 345 / 6e-118 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 341 / 8e-117 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 339 / 2e-115 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 286 / 2e-95 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 420 / 2e-146 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 417 / 1e-145 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 414 / 3e-144 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10011488 pacid=23182644 polypeptide=Lus10011488 locus=Lus10011488.g ID=Lus10011488.BGIv1.0 annot-version=v1.0 ATGACATTCATCACTTCCCCGACGCCGGCCAAATTAAAACCCACCGCCGCCATAACCGCCTCACCCTTACTTCCTCCCCAAATTGGACGAAACCCACAAC CCAAAAGCCCCAATTTCACCCCAACTTCAAAACCCACCACAATCTCTACTCCATATTCTCCGACGAAAGTCGCCGCCCGCGTCGCCACGAGGTTCAATGT AGCAGCAGCAGCTCGCAACTTGGAAGCGGAAGAGAATAATAACAAGAGGAGGAGGAAAATCCTGCTGTCGGACGTGGAGGTGGAGAGGGAGAGGAAGTTG TTCGGAAGGAAATGGAACACGTTGGATGTATCGACGGCGGCGGTGGTCCTGGCGATGCATTTGCTTGCTCTGCCGGCGCCTCTCTGTTTCAGCTGGCCGG CGTTCTGGGTCGCGGTTTCGCTCTACGTCGTCACCGGACTGTTCGGAATTACTCTATCGTTTCATAGACATCTCTCCCACCGGAGCTTCAGGCTCCCCAA GTGGCTCGAATACTTGTTCGCTTACTGTGGCGTTCATGCTCTTCAGGGGAATCCAATAGATTGGGTAAGTACACATAGGTACCACCACCAGTTCTGCGAT TCGGACAGGGATCCACACAGCCCACTTGAAGGCTTCTGGTTCAGTCACATGAGCTGGCTCTTCGACACCAACTATATCGCTCAAAGGTGTGGAGGGAAGA ACAATGTTGTGGATTTGGAGAGTCAACCATTCTATCAGTTGATGAGAGCTACCTATGTTGTTCATCCAATTGCTATGGGATTGCTTCTCTATGCACTCGG TGGATTTTCGTTTCTCGTATGGGGAATGGGTGTGAGGGTAATATGGGTTTACCATATAACGTGGCTGGTGAACTCAGCTTGTCATGTTTGGGGAGTTCAA GACTGGAATACCGGCGACTTATCTCGAAACAATTGGTGGGTTGCGGTGCTGGCGTTTGGAGAAGGTTGGCACAACAATCATCACGCATTCGAGTACTCAG CGAGACATGGCTTGAAATGGTGGGAGATTGATATGACATGGTATACTATCAGGATCCTCCAGGCTCTTCGATTGGCTTCCGACGTTAAGCTTCCTACCGC GTCTCACAGGAAGAAGATGATGATGGGTTTTGAAGGTTGA
AA sequence Show only first row Show all	>Lus10011488 pacid=23182644 polypeptide=Lus10011488 locus=Lus10011488.g ID=Lus10011488.BGIv1.0 annot-version=v1.0 MTFITSPTPAKLKPTAAITASPLLPPQIGRNPQPKSPNFTPTSKPTTISTPYSPTKVAARVATRFNVAAAARNLEAEENNNKRRRKILLSDVEVERERKL FGRKWNTLDVSTAAVVLAMHLLALPAPLCFSWPAFWVAVSLYVVTGLFGITLSFHRHLSHRSFRLPKWLEYLFAYCGVHALQGNPIDWVSTHRYHHQFCD SDRDPHSPLEGFWFSHMSWLFDTNYIAQRCGGKNNVVDLESQPFYQLMRATYVVHPIAMGLLLYALGGFSFLVWGMGVRVIWVYHITWLVNSACHVWGVQ DWNTGDLSRNNWWVAVLAFGEGWHNNHHAFEYSARHGLKWWEIDMTWYTIRILQALRLASDVKLPTASHRKKMMMGFEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	0	1
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	2.4	0.9521
AT1G53430			Leucine-rich repeat transmembr...		Lus10017953 [exp]	3.5	0.9094
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	4.9	0.9264
AT3G47070			unknown protein		Lus10005866 [exp]	5.3	0.9479
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	6.2	0.9093
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	6.3	0.9256
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	6.5	0.9299
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	9.4	0.9174
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	11.6	0.9063
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	13.0	0.9065

Compare expression of checked genes

Lus10011488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.