Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 434 / 4e-153 Protein kinase superfamily protein (.1) AT3G15890 432 / 5e-152 Protein kinase superfamily protein (.1) AT3G09010 275 / 8e-90 Protein kinase superfamily protein (.1) AT1G60800 275 / 3e-87 NIK3 NSP-interacting kinase 3 (.1) AT3G24540 272 / 3e-87 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G68690 275 / 3e-86 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G45780 271 / 9e-86 Leucine-rich repeat protein kinase family protein (.1) AT5G38560 272 / 2e-85 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24550 271 / 3e-85 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 271 / 7e-85 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023130 [exp] 644 / 0 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10019988 [exp] 420 / 2e-146 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10006985 [exp] 417 / 9e-146 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 417 / 2e-145 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10031673 [exp] 414 / 1e-144 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10035071 [exp] 281 / 4e-89 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 282 / 7e-89 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10028715 [exp] 274 / 2e-87 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10024020 [exp] 274 / 2e-87 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032100 [exp] 574 / 0 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 573 / 0 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 421 / 3e-147 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 407 / 1e-142 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 408 / 3e-142 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 270 / 4e-88 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 274 / 4e-87 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.017G110400 [exp] 276 / 7e-87 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 273 / 1e-86 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 273 / 2e-86 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011490 pacid=23182595 polypeptide=Lus10011490 locus=Lus10011490.g ID=Lus10011490.BGIv1.0 annot-version=v1.0 ATGGGGTTCAGTTCCATGATTTGCTGCGGGAAAGCATTGGATCGGAAAGGGCAAGGGAAGAAGCAGGCAAGTTGGAGGATTTTCTCACTGAAGGAACTAC ACGCTGCTACTAACAACTTCAATTATGATAATAAGTTGGGTGAAGGAGGATTCGGCAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAGATTGCTGT TAAGAGGCTGAAAGTCTGGAGCAACAAGGCAGAGATGGAATTCGCAGTCGAAGTCGAAATACTGGCACGAGTTCGGCACAAAAACCTGCTCAGTCTTCGA GGTTATTGCGCGGAAGGCCAAGAGCGTTTGATCGTTTACGACTACATGCCGAATCTAAGCTTGCTTTCTCATCTTCATGGACAGCACTCCGCAGAATGCC TTTTGGATTGGAAGAAACGGATGGACATTGCAATCGGATCCGCTGAAGGAATTGTGTATCTTCACCACCACGCAATGCCACACATCATACACCGAGATGT GAAGGCCAGCAACGTGCTGCTGGACTCGAACTTCCAAGCACAAGTGGCTGATTTCGGTTTCGCAAAGTTCATACCGGACGGCGCAACACACGTGACCACG AGAGTGAAGGGAACGCTCGGCTACCTAGCTCCAGAGTACGCGATGCTGGGTAAAGCATCAGAGAGTTGCGATGTGTACAGCTTCGGGATCCTGCTGCTGG AGCTTTGCAGCGGGAAGAAGCCGCTTGAAAAAGTGAACGCGACCGTGAAACGAACCATCACCGAATGGGCTCTTCCGTTGGCGTGTGCCAAGAGGTTCGA TGAAGTTGCGGACCCGAGGCTGAACGGGAAGTTCGAGGAAGTGGAGATGAAAAGGGTGATCCTTGTGGCTCTTGTTTGCACTCAGACGAAGCCCGAGAAA CGGCCCACGATGCTGGAAGTGGTCGAGCTACTGAAGGGGGATACGAAGGAGAAGTTGAATGAGCTGGAGAATGATGAGTTGTTCAGGAGCACTCCCGAGG GTGGCGAATCGAGACAAGTTGCAGAGGAAGAAAGCTCCGACATGATCTCGGAAGAGAAGGAGATTGCTAAGGATTCCTAG
AA sequence Show only first row Show all	>Lus10011490 pacid=23182595 polypeptide=Lus10011490 locus=Lus10011490.g ID=Lus10011490.BGIv1.0 annot-version=v1.0 MGFSSMICCGKALDRKGQGKKQASWRIFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKAEMEFAVEVEILARVRHKNLLSLR GYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWKKRMDIAIGSAEGIVYLHHHAMPHIIHRDVKASNVLLDSNFQAQVADFGFAKFIPDGATHVTT RVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELCSGKKPLEKVNATVKRTITEWALPLACAKRFDEVADPRLNGKFEEVEMKRVILVALVCTQTKPEK RPTMLEVVELLKGDTKEKLNELENDELFRSTPEGGESRQVAEEESSDMISEEKEIAKDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	0	1
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	1.0	0.8995
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	2.8	0.8866
AT5G02090			unknown protein		Lus10024357 [exp]	4.0	0.8793
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	4.9	0.8843
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	5.0	0.8846
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	5.5	0.8932
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	7.1	0.8627
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	7.3	0.8951
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	7.3	0.8790
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	7.5	0.8658

Compare expression of checked genes

Lus10011490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.