Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52600 308 / 7e-109 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G15710 271 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023131 [exp] 328 / 7e-117 AT1G52600 339 / 5e-121 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10030080 [exp] 255 / 5e-88 AT1G52600 293 / 8e-103 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171200 [exp] 318 / 4e-113 AT1G52600 348 / 7e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.003G062800 [exp] 318 / 9e-113 AT1G52600 350 / 2e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.018G005800 [exp] 253 / 4e-87 AT1G52600 289 / 3e-101 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G274900 [exp] 132 / 2e-40 AT1G52600 132 / 1e-40 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10011491 pacid=23182607 polypeptide=Lus10011491 locus=Lus10011491.g ID=Lus10011491.BGIv1.0 annot-version=v1.0 ATGGGGTGGATCGGAGACACCATTGATTCCGTCAAGTCCGTCCAGATCCGCCAGCTTCTTTCTCAGGGCGTCAGTCTTGGAATGATTGTTACCTCTGCTT TGATAATATGGAAAGTGTTAATGTGCGTCACTGGCAGCGAATCTCCGGTAGTGGTTGTGCTTTCTGGAAGCATGGAACCAGGATTCAAAAGGGGTGATAT TTTGTTTCTGCACATGAGTAACGATCCTATTCGTACTGGAGAGATAGTTGTCTTCAACGTTGATGTTCATGAAAGGCAAGACACTGGCGAAGTTGAAGTC TTAACAAAAGGAGACAATAACTATGGCGATGACAGGCTTTTGTATGCACAAGGTCAGCTTTGGCTGCAGCGGCATCACATCATGGGCAGGGCTGTTGGGT TCTTGCCATATGTTGGTTGGGTGACGATCATCATGACTGAGAAACCCATCATCAAGTATATACTGATTGGTGCTCTGGGGCTGCTTGTTATAACGGCTAA AGACTGA
AA sequence Show only first row Show all	>Lus10011491 pacid=23182607 polypeptide=Lus10011491 locus=Lus10011491.g ID=Lus10011491.BGIv1.0 annot-version=v1.0 MGWIGDTIDSVKSVQIRQLLSQGVSLGMIVTSALIIWKVLMCVTGSESPVVVVLSGSMEPGFKRGDILFLHMSNDPIRTGEIVVFNVDVHERQDTGEVEV LTKGDNNYGDDRLLYAQGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITAKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	0	1
AT5G53650			unknown protein		Lus10008848 [exp]	2.4	0.8915
AT4G20150			unknown protein		Lus10036250 [exp]	7.1	0.8784
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	9.2	0.8779
AT3G52390			TatD related DNase (.1.2)		Lus10013590 [exp]	9.5	0.8688
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	10.6	0.8637
AT4G21110			G10 family protein (.1)		Lus10035562 [exp]	11.6	0.8631
AT1G27435			unknown protein		Lus10032003 [exp]	12.1	0.8673
AT3G05070			unknown protein		Lus10026367 [exp]	14.7	0.8563
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	16.5	0.8761
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10020226 [exp]	16.7	0.8397

Compare expression of checked genes

Lus10011491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.