Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15780 49 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023132 [exp] 149 / 4e-47 AT3G15780 52 / 3e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192500 [exp] 50 / 1e-08 AT3G15780 47 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011492 pacid=23182581 polypeptide=Lus10011492 locus=Lus10011492.g ID=Lus10011492.BGIv1.0 annot-version=v1.0 ATGGCGGCCTGCAGCTTTTCGACCACCGGCGCCGGCGGCAGCGGCAGCGGCAGCACTGCAATCCAAGGCCGTCGACTAGCGCTCCCAATACATCGTAGCC AAATTACAACCTACTCCCACCTTCCTTCTTCTGTATCTTCTAGCTGTTTCCATGGAGGCTTCAGAAGAAATCCCGACCAATACCTACTCTCCCACCGCCA GCGCCGCCGCCGGATGTTCGCTCAGCTGACTCCGCCGCAATCCGACCCGCCTCCCGATGAGGAACCCCTCACACTCACAGGACTGGTAGAGAGAATAAGT AGATTCCAAGACAGGGTTCTGATATTCTCTGCGGTGTTTCTATGGATGTTCGCCTTCTTCTGGTATTCAGCTTGGGACGGCAGGAACAAGGGCGGCGGCG GTGGGGGCGGGGTGGTGGTGTAG
AA sequence Show only first row Show all	>Lus10011492 pacid=23182581 polypeptide=Lus10011492 locus=Lus10011492.g ID=Lus10011492.BGIv1.0 annot-version=v1.0 MAACSFSTTGAGGSGSGSTAIQGRRLALPIHRSQITTYSHLPSSVSSSCFHGGFRRNPDQYLLSHRQRRRRMFAQLTPPQSDPPPDEEPLTLTGLVERIS RFQDRVLIFSAVFLWMFAFFWYSAWDGRNKGGGGGGGVVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15780			unknown protein		Lus10011492 [exp]	0	1
AT3G15780			unknown protein		Lus10023132 [exp]	8.0	0.8593
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	8.9	0.8268
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	12.1	0.8417
AT2G17705			unknown protein		Lus10025950 [exp]	19.6	0.8500
AT2G18680			unknown protein		Lus10015508 [exp]	22.8	0.7979
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	33.6	0.8097
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10007940 [exp]	42.4	0.8021
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	58.2	0.8117
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	63.0	0.7389
					Lus10023285 [exp]	67.8	0.7519

Compare expression of checked genes

Lus10011492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.