Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15390 327 / 6e-114 PDF1A, ATDEF1 peptide deformylase 1A (.1) AT5G14660 89 / 1e-20 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023133 [exp] 451 / 1e-162 AT1G15390 328 / 1e-113 peptide deformylase 1A (.1) Lus10022255 [exp] 93 / 3e-22 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Lus10013086 [exp] 71 / 5e-14 AT5G14660 308 / 3e-105 peptide deformylase 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171800 [exp] 360 / 7e-127 AT1G15390 350 / 2e-122 peptide deformylase 1A (.1) Potri.001G346700 [exp] 103 / 3e-26 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [flax] [poplar] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Lus10011493 pacid=23182603 polypeptide=Lus10011493 locus=Lus10011493.g ID=Lus10011493.BGIv1.0 annot-version=v1.0 ATGGCGGCACCGATAAGCTCCTTAGCACAAGTTTTGGTTCCCCATCTCATCTCCAATTCTTCTAAGCTCGTGAACTCCAACATAGACTTCAGAAGCCGCA AATCCTCGTCTTCCTCTGCAAGAACCAAGGCCGGTTGGCTTCTGGGTCTTGGGGCAAAATCGAAACCAGTCCTGCCGGAGATTGTGAGAGCTGGCGACCC AGTGTTGCACGAGCCAGCTCGTGAAGTTGACCCAGCGGATATTGGTTCGGGGAAGATACAGAAGATAATTGATGACATGGTTAATGTCATGAGGACTGCT CCTGGCGTTGGCCTTGCTGCTCCTCAGATTGGAATCCCATTGAAGATAATAGTATTGGAAGATAAACCAGAATATATTAGCTATGCTCCAAAAGAAGAGA CTCAAGCACAGGATAGGCGGGCTTTCGAACTTCTGGTTATCCTGAACCCCAAGCTTGAGAAGAAAAGCAACAGAACTGCACTATTTTTCGAAGGCTGTTT AAGTGTTGATGGATTCAGAGCAATGGTGGAGCGGTATCTGGACGTTGAGGTTACAGGGCTGACCCGGGACGGCTTGCCAATCAAGGTCGAAGCATCGGGG TGGCAGGCTCGTATCTTACAGCACGAATGCGATCATTTGGATGGAACTCTCTATGTTGACAAGATGGTTCCCAGAACGTTTAGAACGGTCGAGAATCTGG ACTTGCCTCTTGCCGATGGCTGCCCTCAGCAGGGTGTTCGCAAGTAA
AA sequence Show only first row Show all	>Lus10011493 pacid=23182603 polypeptide=Lus10011493 locus=Lus10011493.g ID=Lus10011493.BGIv1.0 annot-version=v1.0 MAAPISSLAQVLVPHLISNSSKLVNSNIDFRSRKSSSSSARTKAGWLLGLGAKSKPVLPEIVRAGDPVLHEPAREVDPADIGSGKIQKIIDDMVNVMRTA PGVGLAAPQIGIPLKIIVLEDKPEYISYAPKEETQAQDRRAFELLVILNPKLEKKSNRTALFFEGCLSVDGFRAMVERYLDVEVTGLTRDGLPIKVEASG WQARILQHECDHLDGTLYVDKMVPRTFRTVENLDLPLADGCPQQGVRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10011493 [exp]	0	1
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	2.6	0.9037
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	3.9	0.9308
AT1G10522			unknown protein		Lus10030655 [exp]	7.3	0.9117
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	9.5	0.8991
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	9.8	0.9135
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	11.4	0.9063
					Lus10011890 [exp]	14.3	0.8928
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	14.7	0.9024
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	15.7	0.9085
					Lus10006809 [exp]	17.0	0.8864

Compare expression of checked genes

Lus10011493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.