Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 96 / 8e-25 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 88 / 1e-21 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 54 / 1e-09 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 54 / 1e-09 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G13810 54 / 2e-09 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT3G50700 54 / 3e-09 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G44160 53 / 3e-09 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G55110 52 / 1e-08 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT2G02080 52 / 1e-08 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G03840 51 / 2e-08 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023138 [exp] 218 / 6e-72 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10009435 [exp] 95 / 9e-24 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10006071 [exp] 88 / 2e-21 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10007168 [exp] 58 / 1e-10 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 56 / 7e-10 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10004497 [exp] 55 / 1e-09 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 54 / 2e-09 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 54 / 3e-09 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 53 / 4e-09 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094100 [exp] 115 / 7e-32 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.019G085400 [exp] 103 / 4e-27 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.013G114600 [exp] 99 / 2e-25 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.004G217100 [exp] 92 / 4e-23 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.014G180600 [exp] 59 / 4e-11 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.002G263600 [exp] 58 / 7e-11 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.005G215100 [exp] 55 / 8e-10 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 55 / 9e-10 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 55 / 9e-10 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.005G027200 [exp] 55 / 9e-10 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011495 pacid=23182659 polypeptide=Lus10011495 locus=Lus10011495.g ID=Lus10011495.BGIv1.0 annot-version=v1.0 ATGTATACGTGCAGCCGATGCAACAAGAAGAACTTCTCGGTGGAGGCTGATTTAAGGAGCCATTTCAAGCACTGTGGGGAGTTGAGGTGGAAGTGCAATT GTGGGACGAGCTTCTCCAGGAAGGACAAGCTGTTTGGGCACATGGCATTGTTCGAAGGTCACATGCCGGCTGCTAGGGAGGAAGAGGATGGAGGAGAAGA GGTGAAGATGATGGTGCAGCAGGAGGAGGATGATGGGAATGGAGAGGGGTTGTTGTTTGATGATGGATTTGGTTCCATGGAGGATGTGTTGGAGTATCCT GCTTCTCCTGATTGGCAAAGGGAGATGTCACTGTTTTGTGGGTTTGGGCAGTGA
AA sequence Show only first row Show all	>Lus10011495 pacid=23182659 polypeptide=Lus10011495 locus=Lus10011495.g ID=Lus10011495.BGIv1.0 annot-version=v1.0 MYTCSRCNKKNFSVEADLRSHFKHCGELRWKCNCGTSFSRKDKLFGHMALFEGHMPAAREEEDGGEEVKMMVQQEEDDGNGEGLLFDDGFGSMEDVLEYP ASPDWQREMSLFCGFGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	0	1
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	1.4	0.8741
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	2.0	0.9006
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	2.2	0.8638
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	2.6	0.8545
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	3.5	0.8733
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	8.7	0.8656
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	9.4	0.8479
AT2G01818			PLATZ transcription factor fam...		Lus10030763 [exp]	10.0	0.8222
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	10.2	0.8370
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	10.7	0.8581

Compare expression of checked genes

Lus10011495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.