Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011496 [exp] 149 / 5e-47 ND / Lus10004409 [exp] 40 / 0.0002 ND 39 / 5e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011497 pacid=23182611 polypeptide=Lus10011497 locus=Lus10011497.g ID=Lus10011497.BGIv1.0 annot-version=v1.0 ATGGTTGGTGATCAAGGATGGGGTCCAACATCTTCAAGAGTGGTTAGCAACAAGGGAGAAGGGCTTTTACCGTCACGGCAGGATCCCCGCTATTTCTCTA AATGGCACCCGCCGGCCATGGACACGTTCAAGTGTAATGTTGGCGTTGCTCTCTTCACCGCTATTCGAAGGATGGGGATGGGTGTAGCACTTTCGGGACC ATGCTGGACGGTTTTTGGTCCGTCAAGGCGGGGAAGCGGCGGAGCTCCTCAAGGCGATGCGTTGGGTGTTCAACTCGTTATTGTTCAGAACTCATGCGTA CCTGTGATAAACAGTAGCTTGGTTCGGGACGGGACCCATGAGTGGCTGTTGTGTATTAATGGCGGATGGCACTGGCCGGCAGCCAACCCGGCCACGACAT TGCTCTTTTTGGTGTTTATTATTATCATTCATTTATGGTTCTAG
AA sequence Show only first row Show all	>Lus10011497 pacid=23182611 polypeptide=Lus10011497 locus=Lus10011497.g ID=Lus10011497.BGIv1.0 annot-version=v1.0 MVGDQGWGPTSSRVVSNKGEGLLPSRQDPRYFSKWHPPAMDTFKCNVGVALFTAIRRMGMGVALSGPCWTVFGPSRRGSGGAPQGDALGVQLVIVQNSCV PVINSSLVRDGTHEWLLCINGGWHWPAANPATTLLFLVFIIIIHLWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011497 [exp]	0	1
AT4G27390			unknown protein		Lus10037884 [exp]	8.0	0.9945
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	8.1	0.9821
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	11.3	0.9887
					Lus10024550 [exp]	13.9	0.9887
					Lus10023136 [exp]	14.1	0.9709
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	16.0	0.9887
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	17.9	0.9887
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	19.6	0.9887
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	19.7	0.9130
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	21.2	0.9887

Compare expression of checked genes

Lus10011497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.