Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 384 / 3e-130 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13080 378 / 7e-128 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26310 371 / 3e-125 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 370 / 1e-124 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 361 / 2e-121 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13110 361 / 2e-121 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT2G02580 360 / 9e-121 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1) AT3G26320 359 / 2e-120 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26210 358 / 6e-120 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26180 356 / 2e-119 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023140 [exp] 836 / 0 AT3G26300 457 / 8e-158 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024315 [exp] 354 / 2e-118 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 348 / 5e-116 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 337 / 1e-112 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033172 [exp] 337 / 1e-111 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 333 / 3e-110 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 329 / 1e-108 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 327 / 6e-108 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 322 / 1e-105 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184000 [exp] 384 / 4e-130 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 382 / 2e-129 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184900 [exp] 382 / 3e-129 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025350 [exp] 365 / 8e-123 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 363 / 4e-122 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 362 / 1e-121 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 330 / 6e-109 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 328 / 2e-108 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 326 / 8e-108 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.015G086000 [exp] 327 / 1e-107 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10011499 pacid=23182639 polypeptide=Lus10011499 locus=Lus10011499.g ID=Lus10011499.BGIv1.0 annot-version=v1.0 ATGAAGGACAACGACCTCGAGTGCTGCAGCCGGCCTCTGGCGGCGGGGGCCAAGCTGCTGTCGTACAACTACCTCGACGTGGCGTTCTCCCCTTACTCCG ACTACTGGCGCGAAATGCGGAAGCTCTTCATCTTCGAGCTCCTCAGCATGAAGCGGGTCCACACTTTCTGGTACGCGCGTGAGGAGCACGTCGATAAGAT GGTGGGACGGATGAAGGAAGCGGCGGCGCGTGGGGAGACGGTCAACGTTAACAAGCTGGTGTTCAACCTCACCGACGGGATCATCGGCACCGTCGCGTTC GGGAGGATGTACGCTCAGGAAGAGTTCAAGGAAGGGTTCGTTAAGGTGCTCGAGGAGGCGATGGACATGTTGAACGGGTTCCACGCAGAGGATTTCTTAC CGACAGCTGGTAAGGTTATTGACTGGTTGACAGGATCGACCGCGAGATGGCAGAAGACGTTCAAGAAACTCGACAATTACTTCGAGAAGGTGATAGCTAT ACACCAAGACCCTAACAGGAAGAAGCCTGAGCATGAGGATGTTGTTGACGTTTTGGTTGGGCTCATGAAGGACCAAACGGCGTCGTTTCAGATCACCAAA GACCATCTCAAGGCTGTTCTCATGAACATGTTCGTGGGGGCGATCGACACAAGCGCAGTGACGGTAGGATGGGCATTCTCGGAGCTGATAAGGAACCCGA GGATCATGAAGAAAGCGCAGGAGGAGGTGAGAGCGGTGGTCGGGCCAAACCAGCACAGGGCGGAAGGTACCGACCTCGACAAGTTCAAGTACCTAGAGCT CATCCTCAAGGAGACATTCCGAAAGCACTCACCGACCCCGCTTGGGGTCCCGCACTTCTGCATGAAGCACTGTAAGGTCGGGGGCTACGACATCCTCCCG GGGACCCAAATCATTATCAACAACTACTCCCTCGGGCGCGACACGAAGACTTGGGTCGATCCGGAATCGTTCTACCCGGAACGGTTCGAAGGGAGCACCA TTGACTACCGAGGGTCCCACTTTGAGCTTATCCCGTTCGGAGCAGGGCGCAGGATCTGCCCCGGATTGGCGATGGGGACCACCGCGGTCAAGTACATGCT GGCGAACTTGTTGTACCATTTCGACTACGAGCTCCCCGACGGGATGAAGCCCGAGGAGTTCAAGTTGGTGCCCGCCGGTGGGCTCACCATTCACAACACG AATGAACTTATCCTTATCCCTAAGACCCATGTCTTCTAA
AA sequence Show only first row Show all	>Lus10011499 pacid=23182639 polypeptide=Lus10011499 locus=Lus10011499.g ID=Lus10011499.BGIv1.0 annot-version=v1.0 MKDNDLECCSRPLAAGAKLLSYNYLDVAFSPYSDYWREMRKLFIFELLSMKRVHTFWYAREEHVDKMVGRMKEAAARGETVNVNKLVFNLTDGIIGTVAF GRMYAQEEFKEGFVKVLEEAMDMLNGFHAEDFLPTAGKVIDWLTGSTARWQKTFKKLDNYFEKVIAIHQDPNRKKPEHEDVVDVLVGLMKDQTASFQITK DHLKAVLMNMFVGAIDTSAVTVGWAFSELIRNPRIMKKAQEEVRAVVGPNQHRAEGTDLDKFKYLELILKETFRKHSPTPLGVPHFCMKHCKVGGYDILP GTQIIINNYSLGRDTKTWVDPESFYPERFEGSTIDYRGSHFELIPFGAGRRICPGLAMGTTAVKYMLANLLYHFDYELPDGMKPEEFKLVPAGGLTIHNT NELILIPKTHVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10011499 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023144 [exp]	1.4	0.9480
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10000627 [exp]	2.0	0.9210
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10023140 [exp]	3.0	0.9009
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	4.0	0.8576
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10007421 [exp]	6.3	0.8369
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	8.4	0.8216
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	10.4	0.8289
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	11.2	0.7774
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	13.7	0.7860
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10019364 [exp]	14.4	0.8199

Compare expression of checked genes

Lus10011499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.