Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 679 / 0 Plant protein of unknown function (DUF247) (.1) AT3G50170 609 / 0 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50130 590 / 0 Plant protein of unknown function (DUF247) (.1) AT3G50140 546 / 0 Plant protein of unknown function (DUF247) (.1) AT3G50150 541 / 0 Plant protein of unknown function (DUF247) (.1) AT3G50180 498 / 4e-172 Plant protein of unknown function (DUF247) (.1) AT3G50160 477 / 6e-165 Plant protein of unknown function (DUF247) (.1) AT3G50190 453 / 7e-156 Plant protein of unknown function (DUF247) (.1) AT2G36430 264 / 8e-83 Plant protein of unknown function (DUF247) (.1) AT5G22550 223 / 1e-66 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 292 / 2e-93 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 252 / 1e-77 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 244 / 2e-74 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 241 / 4e-74 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 235 / 8e-72 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 230 / 8e-70 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 228 / 9e-69 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 222 / 1e-66 AT4G31980 251 / 5e-76 unknown protein Lus10018320 [exp] 222 / 8e-66 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047700 [exp] 722 / 0 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 308 / 1e-99 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.001G071400 [exp] 283 / 1e-89 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 278 / 6e-88 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 275 / 2e-87 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 276 / 3e-87 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 273 / 6e-86 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 260 / 4e-81 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 234 / 1e-71 AT4G31980 317 / 1e-101 unknown protein Potri.010G144200 [exp] 233 / 2e-71 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10011501 pacid=23140433 polypeptide=Lus10011501 locus=Lus10011501.g ID=Lus10011501.BGIv1.0 annot-version=v1.0 ATGGTCGCCGTCTTCAACAAAGATCTCCTCAGTTGGTACCTCATCACTCTCAAGCTCCGTGAAACCGTCGAATCCTCCTCCTCCTCCGCCGCCACCGCTG TACCAAATTCTTACCCCCTCCTCCTTGAATACCCACAACAACAACCACCGCCGCCGTCGAAACCGCCGCCGGACTCCGATTGGATCATATCCATAACCGA AAAGCTCAACCGAGCCAAAACCGACGACGATTCCTCCTCATGGGAACGATTCTCCATCTACAAGGTCCCACACTACCTCCGGGAAGAAGACGACAAAGCC TACGCCCCACAGTTAGTCTCCTTGGGGCCTTACCACCACGGCAAGAAGCGGCTCCGGCCAATGGAACGTCACAAATGGCGGTGTTTGAACCGGGTCCTGA CCCGAACCGATCACGAAATCGGAATCTACCTCGAATCGGTCAAGGAGCTCGAAGACCGAGCTAGATCCTGCTATGAAGGCTCGAATGCAATATGTCTGAG CAGTAACGAGTTCGTCGAGATGATGGTGCTCGACGGCTGCTTCGTGATCGAGCTCCTCCGCGGAGCAGCCGGTTTGGGGTTTAGGGAGTTAGGGTACTCG AGAAACGACCCGGTTTTCGCGATGAGGGGTTCGATGCACTCAATCCAGAGGGATATGATAATGCTGGAGAATCAGATCCCTTTGTTTGTGTTGGATAAGC TGATGGGGATTCAGATGAATGATTCGGAGCAGAAGGGTATAATCGGAAAGCTGGCGATCCGGTTTTTTGACCCGTTGATGCCTACCGATGAGCCTCTGTC GAAATCGGATCGGACCAGGCTTGAATCGTCCCTCAGGAGGGATGTGGCGAATTTCGACCCGTTGTCGGATATCGGAGGAGGGCTGCATTGTCTTGATGTG TTCAGGAGGAGCTTGCTGAGACCCGGTACGGAGCAGCCGGTTCCGAGGATCTGGATCAGGAAGCGGTCCAACGGTGATGGTCGGATAGTTGACAAACGCC GGCAGCAGTTGATACACTGTGCAATAGAGCTGAAGGAGGCAGGGATCAAGTTCAAGAGGAGGAGAACCGACCGGTTCTGGGACATCAAGTTCAAGAACGG GGTTCTCAGGATGCCGAGGATCCTGATCCACGACGGGACGAAATCGCTGTTCCTGAACCTGATAGCTTTCGAGCAGTGCCATTTAGACTGCAACAACGAC ATCACGTCTTACGTGATATTCATGGACAACCTGATAAACTCAAACGAGGATGTTGCGTACCTGCATTACTGCGGGATCGTCGAGCATTGGCTCGGGAGCG ATGCCGAGGTTGCCGATCTTTTCAACAGGCTGTGTCAGGAGGTGGTCTTCGACGTTAATGGGAGCTACCTGTCGCGGCTTTCGGAGGAAGTCAATCAGTA CTATAACCACCGGTGGAACGCTTGGCTCGCAAGCTTGAAGCATAAGTACTTTGGCAATCCATGGGCGATCGTCTCGTTGTTCGCTGCTGTTGTGCTCTTG CTTCTTACTTTCACACAGACGTTCTACGGAGTCTATGCCTACTACCGGCCAGCAGCATCCTGA
AA sequence Show only first row Show all	>Lus10011501 pacid=23140433 polypeptide=Lus10011501 locus=Lus10011501.g ID=Lus10011501.BGIv1.0 annot-version=v1.0 MVAVFNKDLLSWYLITLKLRETVESSSSSAATAVPNSYPLLLEYPQQQPPPPSKPPPDSDWIISITEKLNRAKTDDDSSSWERFSIYKVPHYLREEDDKA YAPQLVSLGPYHHGKKRLRPMERHKWRCLNRVLTRTDHEIGIYLESVKELEDRARSCYEGSNAICLSSNEFVEMMVLDGCFVIELLRGAAGLGFRELGYS RNDPVFAMRGSMHSIQRDMIMLENQIPLFVLDKLMGIQMNDSEQKGIIGKLAIRFFDPLMPTDEPLSKSDRTRLESSLRRDVANFDPLSDIGGGLHCLDV FRRSLLRPGTEQPVPRIWIRKRSNGDGRIVDKRRQQLIHCAIELKEAGIKFKRRRTDRFWDIKFKNGVLRMPRILIHDGTKSLFLNLIAFEQCHLDCNND ITSYVIFMDNLINSNEDVAYLHYCGIVEHWLGSDAEVADLFNRLCQEVVFDVNGSYLSRLSEEVNQYYNHRWNAWLASLKHKYFGNPWAIVSLFAAVVLL LLTFTQTFYGVYAYYRPAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	0	1
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	1.4	0.9063
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	2.0	0.9006
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	2.4	0.8942
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	2.8	0.8860
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	3.9	0.8794
AT3G01720			unknown protein		Lus10022320 [exp]	4.2	0.8479
AT2G17550			unknown protein		Lus10035987 [exp]	4.5	0.8421
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	6.9	0.8490
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	8.5	0.8694
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	8.8	0.8154

Compare expression of checked genes

Lus10011501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.