Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39220 254 / 9e-87 ATRER1A Rer1 family protein (.1) AT2G23310 240 / 7e-81 ATRER1C1, ATRER1C Rer1 family protein (.1.2) AT2G21600 235 / 3e-79 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT2G18240 197 / 6e-64 Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019323 [exp] 358 / 2e-127 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10041765 [exp] 239 / 1e-80 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10028317 [exp] 239 / 2e-80 AT4G39220 254 / 8e-87 Rer1 family protein (.1) Lus10028319 [exp] 225 / 2e-75 AT2G21600 249 / 4e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10041766 [exp] 225 / 2e-75 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10002889 [exp] 112 / 1e-31 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 102 / 3e-28 AT4G39220 112 / 7e-33 Rer1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047800 [exp] 267 / 8e-92 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.005G141700 [exp] 258 / 4e-88 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2) Potri.004G156900 [exp] 249 / 6e-85 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.009G118500 [exp] 246 / 2e-83 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.005G228900 [exp] 239 / 6e-81 AT2G21600 235 / 1e-79 endoplasmatic reticulum retrieval protein 1B (.1) Potri.002G034200 [exp] 239 / 7e-81 AT2G21600 265 / 3e-91 endoplasmatic reticulum retrieval protein 1B (.1) Potri.004G156800 [exp] 196 / 1e-63 AT4G39220 251 / 6e-86 Rer1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [flax] [poplar] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Lus10011502 pacid=23140417 polypeptide=Lus10011502 locus=Lus10011502.g ID=Lus10011502.BGIv1.0 annot-version=v1.0 ATGGAGAATCCCAATGGTGGTGGTGGTGGTGGTGGTGGAGCCCTAGCTGGAGACGATTCGTCGTCTTCTCCTTCCGCCGTCATCTCGCAGTGGACGTTCG CCGTCACGCGGATGTACCAGCACATGCTTGACAAGACAGTGCCGCACATCTGGTACAGGTGGATCGCCTGTTTTGTTGCTGCGGCGATCTATGGCCTTCG TGTTTACTTCGTTGAAGGCTTCTACATCGTCACCTACGGCCTTGGAATCTATATGCTGAACCTGTTGATCGGATTCCTTTCGCCGCAGATTGACCCCGAG GTCAGCGATGGTCCTTCGCTCCCCACCCGTGGATCCGATGAGTTCCGGCCTTTCGTCCGCCGGCTCCCTGAGTTCAAATTCTGGTACTCTATTACAAAGG CATTCTTCATTGCATTCTGGATGACTTTCTTCGCGATATTTGACGTGCCAGTCTTCTGGCCGATACTTCTTTTCTACTGGATTATGCTGTTCATCCTCAC CATGAGACGACAAATCATGCACATGGTCAAATACAAATACGTCCCTTTCTCTTTCGGCAAGCAGGTCGAGAATCTAGAGTGGGAGTTATTGCTTGCTGTT CGTGGAACATTGATTCAAGAATTTTAA
AA sequence Show only first row Show all	>Lus10011502 pacid=23140417 polypeptide=Lus10011502 locus=Lus10011502.g ID=Lus10011502.BGIv1.0 annot-version=v1.0 MENPNGGGGGGGGALAGDDSSSSPSAVISQWTFAVTRMYQHMLDKTVPHIWYRWIACFVAAAIYGLRVYFVEGFYIVTYGLGIYMLNLLIGFLSPQIDPE VSDGPSLPTRGSDEFRPFVRRLPEFKFWYSITKAFFIAFWMTFFAIFDVPVFWPILLFYWIMLFILTMRRQIMHMVKYKYVPFSFGKQVENLEWELLLAV RGTLIQEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	0	1
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	1.0	0.9251
AT1G21830			unknown protein		Lus10018177 [exp]	2.8	0.9115
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	3.5	0.9043
AT5G21070			unknown protein		Lus10026764 [exp]	4.0	0.8978
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10006435 [exp]	5.1	0.8775
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	7.4	0.8963
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	7.7	0.9109
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	8.1	0.9000
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	11.2	0.8786
AT1G14630			unknown protein		Lus10039139 [exp]	11.8	0.8804

Compare expression of checked genes

Lus10011502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.