Plant FIBer expression Database

Lus10011503 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55160 97 / 7e-26 unknown protein
AT2G19530 50 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019322
[exp]
181 / 2e-59 AT1G55160 126 / 3e-37 unknown protein
Lus10028176
[exp]
40 / 0.0005 AT1G02080 2621 / 0.0 transcription regulators (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G200200
[exp]
99 / 1e-26 AT1G55160 140 / 2e-42 unknown protein
Potri.006G151200
[exp]
56 / 2e-10 AT1G55160 90 / 7e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10011503 pacid=23140419 polypeptide=Lus10011503 locus=Lus10011503.g ID=Lus10011503.BGIv1.0 annot-version=v1.0
ATGAGTGAATCAGGTCCGAAGCTGTATACGAACAAGCCGAAGAAATCACAGCTGAAGCAATTCCAGGAGGGGGATCCGAAGTTGAAGAATGTATCCGCAC
CACCTGTAAAAGCGGCAACTCCGGCGGCGCCATCTTCGGCGGGATCATACCAGATGGGCGGTGGTGGGTCTACTCCTCCGCCGCCGCCGAAGGAGTCGTT
CGCGAGGCGATACAAGTTCATGTGGCCTCTGCTTTTGGCGGTTAATTTCACTGTTGGAGCTTACCTGTTCACGAGAACGAGAAAGAAGAAGGAGGAGGAG
ACGGATTATGGTCATGGAGCGTTGACGGAGAGTGAGCAACGGGAAGTGTTTAAGTGGGTGTTGGAAGAGAAGAGGAAGATGAATCCGAAAGATGAAGAAG
AGAAGAAACGGATCGAGGAAGAAAAGGCTGTTCTTAAGCACTTCATTCGAGCCAAACCGATCCCTCCTTTCTAG
AA sequence
>Lus10011503 pacid=23140419 polypeptide=Lus10011503 locus=Lus10011503.g ID=Lus10011503.BGIv1.0 annot-version=v1.0
MSESGPKLYTNKPKKSQLKQFQEGDPKLKNVSAPPVKAATPAAPSSAGSYQMGGGGSTPPPPPKESFARRYKFMWPLLLAVNFTVGAYLFTRTRKKKEEE
TDYGHGALTESEQREVFKWVLEEKRKMNPKDEEEKKRIEEEKAVLKHFIRAKPIPPF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55160 unknown protein Lus10011503
[exp]
0 1
AT1G32310 unknown protein Lus10030955
[exp]
2.0 0.9305
AT3G55960 Haloacid dehalogenase-like hyd... Lus10004810
[exp]
5.8 0.9360
AT1G02680 TAF13 TBP-associated factor 13 (.1) Lus10028629
[exp]
6.8 0.9136
AT4G27745 Yippee family putative zinc-bi... Lus10000335
[exp]
8.1 0.9077
AT5G61500 ATATG3 autophagy 3 (APG3) (.1) Lus10009664
[exp]
8.9 0.9299
AT3G10915 Reticulon family protein (.1.2... Lus10029041
[exp]
12.4 0.9294
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10036817
[exp]
13.0 0.9299
AT3G25910 Protein of unknown function (D... Lus10043292
[exp]
14.4 0.9172
AT1G03330 Small nuclear ribonucleoprotei... Lus10000666
[exp]
15.9 0.8704
AT1G12520 ATCCS, CCS1 copper chaperone for SOD1 (.1.... Lus10006686
[exp]
17.5 0.9169

Lus10011503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.