Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67240 356 / 1e-115 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50100 342 / 7e-115 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 300 / 2e-97 SDN2 small RNA degrading nuclease 2 (.1.2) AT3G50090 234 / 6e-74 Exonuclease family protein (.1) AT5G25800 112 / 8e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G15080 72 / 5e-14 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G48100 71 / 3e-13 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT5G40310 60 / 1e-09 C2H2ZnF Exonuclease family protein (.1) AT3G27970 58 / 4e-09 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019321 [exp] 587 / 0 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 576 / 0 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10019320 [exp] 548 / 0 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2) Lus10018935 [exp] 117 / 4e-28 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 115 / 9e-28 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 110 / 7e-26 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 106 / 2e-24 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000997 [exp] 73 / 3e-14 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 72 / 4e-14 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048000 [exp] 478 / 1e-166 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 119 / 4e-29 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G373500 [exp] 69 / 5e-13 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.017G073300 [exp] 57 / 9e-09 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.002G215700 [exp] 56 / 3e-08 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10011505 pacid=23140398 polypeptide=Lus10011505 locus=Lus10011505.g ID=Lus10011505.BGIv1.0 annot-version=v1.0 ATGGACGAGAAACTAGCCGCTGCGATCGCCGCCTCTCCGGCGAACGTTCTGACTGAGATTGTGAAGCTGGCGCAATTCCAAGGACGCCAGGGCACCAAAG GCAGCTGGGAGGACTTCCTCGACGTCTACGATACTAATCTCGGTTCATCGCTCAGTGATCCTTGCAGGAGGCCTCTAGAGGCTTTGGTTTCCTTCCTCCA AACGTTCACTCGAGAAGCAGACAAGAAGTTTGTTGATAATGTCCTTGGATCGTATTCACGCCGGCAAGTGCTCTTGCAGTTTGCCAAACAGTCTTCCGAC GATCTTTCACCAGAACAGAGGCTGGTTCGTTTAACACTTGAGCATCCACTTTTCATGTCCAAGTATGCATTCCCTACCTATTATGGAAAGGGTTGGTTGG TGACCGAATCTTTCAAAGGATTCAATCTGGAAAGCTCTAATAAGATGCTTGCTGTTGATTGTGAGATGGTTCTTTGCAACGATGCTACTGATGCTGTTGT GAGAGTTTGCATCGTGGATTCTGATTTACAGGTCATGCTTGACGAAACAGTGAATCCTGATAAGCCTATAGTAGATTACCGAACTGACATAACTGGAATC TATCCTGAAGATTTGGATAACGTTACATGTTCGTTAATGGACATTCAGAGATGCATGGAAAAGCTTTTGTCCAGAGGAAGAACCATTTTAGTGGGGCATG GGTTGTATAATGACCTACTTGCATTGAAGATAGACCATATCAGAGTTATAGACACATCACTCATCTTCAAAACTTCATATGGTCGTATGCCGTCTTTGCA TAATTTGTGCAAGACGATTCTGGGATACGAACTCCGGGAGGAAGGCGCTCCCCATGATTGCTTAGACGATGCATGCACCGCAATGAAGATTGTTCTGGCA ATGATGAAGCTTGGAATTGATAATGTGACTACAAATATTGTTTCCGAAGACGAACTTTCAAAGCTACTCCTTCACAAAATACCAAGCGCGGTACCTACTG AAGCACTACGAAGCATATTTCCTGAGAACCTCACCATTGAACTGAAGCCGCCAGTTAAGAGAGCCAAGCATTACTCGGTGCTCGCCGTCTTTAAGAATCC ACGACAGGCAGACGAAGCATTTGAGAGAGTCGAGGGCTCCATTGACAAGGATTCCGCAGGACGGCCACAGAAGCTGGTTACGGTCGTGTTCGACACTGCG AGAATCGCCACTGTTTTCGTGCATAAAATGTTGCCCGAGGATGATGACTTGCAACAGAAGTTATCATCACTGGATATAAGCGATTAG
AA sequence Show only first row Show all	>Lus10011505 pacid=23140398 polypeptide=Lus10011505 locus=Lus10011505.g ID=Lus10011505.BGIv1.0 annot-version=v1.0 MDEKLAAAIAASPANVLTEIVKLAQFQGRQGTKGSWEDFLDVYDTNLGSSLSDPCRRPLEALVSFLQTFTREADKKFVDNVLGSYSRRQVLLQFAKQSSD DLSPEQRLVRLTLEHPLFMSKYAFPTYYGKGWLVTESFKGFNLESSNKMLAVDCEMVLCNDATDAVVRVCIVDSDLQVMLDETVNPDKPIVDYRTDITGI YPEDLDNVTCSLMDIQRCMEKLLSRGRTILVGHGLYNDLLALKIDHIRVIDTSLIFKTSYGRMPSLHNLCKTILGYELREEGAPHDCLDDACTAMKIVLA MMKLGIDNVTTNIVSEDELSKLLLHKIPSAVPTEALRSIFPENLTIELKPPVKRAKHYSVLAVFKNPRQADEAFERVEGSIDKDSAGRPQKLVTVVFDTA RIATVFVHKMLPEDDDLQQKLSSLDISD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	0	1
					Lus10006458 [exp]	1.4	0.7774
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	16.4	0.7242
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	17.7	0.7493
AT2G30530			unknown protein		Lus10034444 [exp]	24.5	0.7166
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	27.2	0.7478
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	29.5	0.7109
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	37.8	0.7384
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022197 [exp]	62.4	0.7120
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040396 [exp]	86.9	0.6785
AT4G37810			unknown protein		Lus10011570 [exp]	89.2	0.6906

Compare expression of checked genes

Lus10011505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.