Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67250 561 / 0 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 520 / 0 VFB2 VIER F-box proteine 2 (.1) AT1G47056 489 / 2e-169 VFB1 VIER F-box proteine 1 (.1) AT4G07400 481 / 1e-165 VFB3 VIER F-box proteine 3 (.1) AT4G15475 81 / 4e-16 F-box/RNI-like superfamily protein (.1) AT5G23340 78 / 3e-15 RNI-like superfamily protein (.1) AT2G25490 75 / 4e-14 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G26810 71 / 1e-12 AFB2 auxin signaling F-box 2 (.1) AT5G49980 69 / 3e-12 AFB5 auxin F-box protein 5 (.1) AT4G24390 69 / 5e-12 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019319 [exp] 845 / 0 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10018737 [exp] 531 / 0 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10024798 [exp] 149 / 6e-42 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10012764 [exp] 103 / 9e-23 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 91 / 7e-19 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 87 / 1e-17 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10041087 [exp] 84 / 2e-17 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 82 / 9e-17 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10002165 [exp] 77 / 2e-14 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048101 [exp] 578 / 0 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 566 / 0 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.014G023500 [exp] 545 / 0 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.002G123100 [exp] 539 / 0 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.006G081600 [exp] 286 / 2e-89 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.001G323100 [exp] 79 / 4e-15 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 77 / 1e-14 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.017G056400 [exp] 72 / 2e-13 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.013G013100 [exp] 69 / 6e-12 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 67 / 7e-12 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011506 pacid=23140385 polypeptide=Lus10011506 locus=Lus10011506.g ID=Lus10011506.BGIv1.0 annot-version=v1.0 ATGGGACAGTCCACTTCTTCATCCACCATCGTCACTTCCCCCGTCGTCACAAGCGGCCGTCTCCCCTCTCCACCGCCGCCGCCACTGCATTTCCCGATCG ATGATGTCCCCCCAGCCGAGGAAGACGACATCCAGCCGGATTACGACTACACGAAGGGGATTCCCGACGACTGTCTGGCACACGTCTTTCATTTCCTCGG CGCTGGCGATCGGAAGAGCAGCTCCGTGGTATGCCGCAGGTGGCTGCGGGTAGACGGGGAGAGACGCCACCGTCTCTCGTTGGACGCGAATTCGGAGATC CTGTCTTCTCTTCCGTCGATCTTCGCGAGGTTCGACTCCGTGACCAAGCTGGCCCTCCGCTGCGACCGGAAGTCGATCAGCTTGGACGATGACGCGTTCC TGATGATCTCCGTCAAGTGCCCGAATCTCACGAGGTTGAAGCTACGCGGATGCCGCGAGATCACGGATCACGGGATGGCGGCGTTCGCTCAGCACTGCAG GAGCTTGAAGAAGCTGTCGTGTGGATCCTGTTCCTTTGGCGCCAAAGGTATGAACGCTGTTCTTGAGAACTGTACCTCTCTGGAGGAGCTTTCGATTAAG CGGCTTAGAGGTATTCATGACGGTACTGATCTGATCGGAGTCGGAGCTGCCGCGGCTTCCTCGTTGAGATCGATCTGTTTGAAAGAGCTGGTCAACGGGC AATCGTTTGAGCCGCTGGTGATTGGTGCGAGAAATCTTCGCTCCTTGAAGATTTTCAGGTGTGTAGGTGACTGGGATAAAGTGCTTAAACTGAGAGCCAA ACAAGAATCCGGTGGGAATGGTTCATTGGTTGAGATTCACCTTGAGAGGATTCAAGTGAGCGATGCAGGGCTAATTGGGATCTCGAAATTCCCCAATCTT GAGATTCTGCACATAGTGAAAACCCCTGAATGTTCGAATTCGGGTCTCATTTCCATTGCTGAGAACTGCAGGAAGCTTAGGAAGCTCCACATTGATGGTT GGAGGACAAACAGGATTAGTGACAACGGCTTAATCGCCATAGCTGAGCAATGCTCCAACTTGGAGGAGCTTGTCCTGATCGGTGTGAATGCCACCCATCT GAGCTTGAGATTGATAGCTGCAAATTGCCGAAATCTCGAAAGATTAGCCCTTTGCGGAAGTGGAACCATCAGAGACGAGGAGATCGTTTGCATCTCCGAG AAATGTATGTCCTTGAAGAAGCTTTGTATCAAAGGGTGTGCTATTTCAGATAGAGCCATTGCCACCCTCGCTTGGGGGTTCCCGAATCTGGTTAAGGTCA AGGTGAAGAAATGCAAAGGGGTGACGTGTGGGATCGTGGACTGGCTGCAAGAGCGTAAACCGAAGCTGGTAGTCGACTTCAATGGAGTCCAGATCGAACT ATTGGAGGAAACTAGCGGTACCGATGGCGGAGTAGTACCGGATATGCAGGCTGATCAGTTTCTCCCTGTGTTGGATGCTCGAGTAAACATCGTTGAAGGT CCATCATCAAACAGTACTGCTGCAGGGAGGATGGCAGCTTTTCGATCCACAATCGGGGATTTCGCGAGTAGGAACATCGTCGCTTGCGCGTTCAGCCGGT GGTCGAACAGTTCAGGCTAA
AA sequence Show only first row Show all	>Lus10011506 pacid=23140385 polypeptide=Lus10011506 locus=Lus10011506.g ID=Lus10011506.BGIv1.0 annot-version=v1.0 MGQSTSSSTIVTSPVVTSGRLPSPPPPPLHFPIDDVPPAEEDDIQPDYDYTKGIPDDCLAHVFHFLGAGDRKSSSVVCRRWLRVDGERRHRLSLDANSEI LSSLPSIFARFDSVTKLALRCDRKSISLDDDAFLMISVKCPNLTRLKLRGCREITDHGMAAFAQHCRSLKKLSCGSCSFGAKGMNAVLENCTSLEELSIK RLRGIHDGTDLIGVGAAAASSLRSICLKELVNGQSFEPLVIGARNLRSLKIFRCVGDWDKVLKLRAKQESGGNGSLVEIHLERIQVSDAGLIGISKFPNL EILHIVKTPECSNSGLISIAENCRKLRKLHIDGWRTNRISDNGLIAIAEQCSNLEELVLIGVNATHLSLRLIAANCRNLERLALCGSGTIRDEEIVCISE KCMSLKKLCIKGCAISDRAIATLAWGFPNLVKVKVKKCKGVTCGIVDWLQERKPKLVVDFNGVQIELLEETSGTDGGVVPDMQADQFLPVLDARVNIVEG PSSNSTAAGRMAAFRSTIGDFASRNIVACAFSRWSNSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	0	1
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	1.0	0.8475
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10029293 [exp]	2.2	0.8082
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	9.4	0.8242
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	15.9	0.7613
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	20.8	0.7865
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	25.3	0.7892
AT2G17990			unknown protein		Lus10028465 [exp]	33.5	0.7582
AT3G12830			SAUR-like auxin-responsive pro...		Lus10031754 [exp]	38.6	0.7675
AT3G26750			unknown protein		Lus10021459 [exp]	45.2	0.7199
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	65.3	0.7566

Compare expression of checked genes

Lus10011506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.