Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67260 305 / 5e-102 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 295 / 4e-98 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 260 / 2e-84 CYCD3;1 CYCLIN D3;1 (.1) AT2G22490 150 / 4e-42 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 143 / 1e-39 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 132 / 9e-36 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 109 / 2e-27 CYCD4;2 cyclin d4;2 (.1) AT4G37630 108 / 8e-27 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 91 / 2e-20 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 88 / 3e-19 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019317 [exp] 578 / 0 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10019825 [exp] 256 / 1e-82 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 252 / 4e-81 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10018739 [exp] 221 / 4e-69 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 220 / 4e-69 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10027874 [exp] 192 / 3e-57 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10029194 [exp] 135 / 6e-37 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 129 / 3e-34 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10002824 [exp] 99 / 1e-23 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141900 [exp] 379 / 6e-131 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.007G048300 [exp] 365 / 9e-126 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.001G301800 [exp] 277 / 6e-91 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 269 / 3e-88 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.002G123000 [exp] 269 / 6e-88 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 262 / 4e-85 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G103500 [exp] 159 / 1e-45 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 155 / 2e-44 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.001G292300 [exp] 137 / 4e-37 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.010G095200 [exp] 135 / 7e-37 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011507 pacid=23140374 polypeptide=Lus10011507 locus=Lus10011507.g ID=Lus10011507.BGIv1.0 annot-version=v1.0 ATGAAACCACATCACGAACACCAGCTCCCATCGCCGCTCCTGGAAGGGCTCTACTGTGAGGAAGATGGGTTATTCTCGCCGCCGGCGAGGGAACAAGTAG CAGACGGCGGCGGCGGAGGCATTCAATATGGGGTCGCTTTGGAGCCGGGGGACTTGTTGTGGGAGGAAGACGAGCTGGTTTCCTTGATTTCCAAACAGAG AGCTGGGAATGACGATGTGCAGACAGGGTGTTCGAGGGTTTGCCGCAGAGAGGCAATCGATTGGATGTTGAGAGTGAAGGCGCATTATGGATTTGCTGCT TTGACCTGTGTTCTTGCAGTGAATTATTTCGATAGATTCGTTTCTGGTTTCAGTTTTCGAGAGGACAAGCCTTGGATGGGTCAGCTTGCTGCTGTAGCTT GCTTGTCTCTTGCTGCTAAAGTGGAGGAAACCCAAGTGCCTCTTCTCTTGGACCTGCAAGTGGAGGACTCAAAGTATGTGTTTGAACCAAAGACCCTAAA GAAAATGGAGCTTCTTGTCCTGTCTACTCTTCAATGGAGGATGAATCCAGCTACCCCAATTCAATTCTTTGACCACATTATCAGGCGGCTTGGAATGAAG GCCCATCTGCTTCCGGAGTTCTTGTGGAGGTGTGAAAGTTTACTTCTTTCTGTGATTGCTGATTCAAGATTCATGAGGTTCCTTCCCTCGATATTAGCTG CCGCAACAATGCTGCACGTTATCAAGGAAGTAGAGGAATGCAACGAAGAGGAATACCGAAACCAGCTTATTTCTGTGCTCAAAATCAGCGAGGATGAGGT CATTGAGTGTTACGAACTCATTGGCTCACAAGAGCGTAGTCACAAACGCAAGTATCCATCAACCGAACCGGGCAGCCCTAGTGGCGTAATCGATGCTTCT TTCAGCAGCGACAGCTCAAATAGTTCGTGGGATGTGGCCTCTTCTTCGCCTTTGCCTATGTACAAGAGGAGCAGAACTTGGGACCAGCAGATGCGATTGC CAAAACAGAATCGTACGTTCGCTGATCCAGTTAGCAGTCCTCATTAG
AA sequence Show only first row Show all	>Lus10011507 pacid=23140374 polypeptide=Lus10011507 locus=Lus10011507.g ID=Lus10011507.BGIv1.0 annot-version=v1.0 MKPHHEHQLPSPLLEGLYCEEDGLFSPPAREQVADGGGGGIQYGVALEPGDLLWEEDELVSLISKQRAGNDDVQTGCSRVCRREAIDWMLRVKAHYGFAA LTCVLAVNYFDRFVSGFSFREDKPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEDSKYVFEPKTLKKMELLVLSTLQWRMNPATPIQFFDHIIRRLGMK AHLLPEFLWRCESLLLSVIADSRFMRFLPSILAAATMLHVIKEVEECNEEEYRNQLISVLKISEDEVIECYELIGSQERSHKRKYPSTEPGSPSGVIDAS FSSDSSNSSWDVASSSPLPMYKRSRTWDQQMRLPKQNRTFADPVSSPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10026670 [exp]	1.4	0.8811
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	4.5	0.8806
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	7.3	0.8712
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10026672 [exp]	8.2	0.8270
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	12.0	0.8646
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	20.8	0.8369
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10036949 [exp]	21.2	0.8274
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	21.2	0.8314
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	23.2	0.8374
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10021711 [exp]	28.3	0.7713

Compare expression of checked genes

Lus10011507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.