Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67270 363 / 6e-126 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) AT5G62500 276 / 4e-92 ATEB1B end binding protein 1B (.1) AT3G47690 274 / 2e-91 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019316 [exp] 520 / 0 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Lus10023606 [exp] 281 / 2e-94 AT5G62500 397 / 6e-141 end binding protein 1B (.1) Lus10024235 [exp] 273 / 8e-91 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048700 [exp] 404 / 6e-142 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.005G142200 [exp] 400 / 2e-140 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.012G069400 [exp] 289 / 2e-97 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1) Potri.015G062900 [exp] 288 / 8e-97 AT5G62500 421 / 3e-150 end binding protein 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03271 [flax] [poplar] EB1 EB1-like C-terminal motif CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10011508 pacid=23140422 polypeptide=Lus10011508 locus=Lus10011508.g ID=Lus10011508.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGATCGGGATGATGGACCCGGCGTACTTCGTCGGCAGATCAGAGATTCTCGCTTGGATCAACTCCACTCTCAAACTCAATCTCTCCAAAG TTGAAGAGGCGTGCGGTGGAGCTGTCCACTGCCAGTTGATGGACGCGGTTCATCCAGGAATTGTTCCGATGCACAAGGTGAACTTCGATGCCAGGAGTGA GTACGAAAAGATTCAGAACTACAAGGTGCTTCAGGATGTGTTCAACAAGCTCAAAATCACCAAGCATATTGAAGTGACGAAGCTTGTGAAAGGAAGGCCG CTTGATAATCTGGAGTTTATGCAGTGGCTGAAGCACTACTGCGATTCCGTCAACGGAGGCCTTGCCGATTACAATCCAACTGAGAGAAGAGAAGCTAGCA AGGGAGTGAAAGAACTGGCAAAGAGAGGAGGTCCACCCTCTCAAACATCATCCAAGGCCTCCAATGCAGCTGCATCCAAAGCTCAACACCATGGCGCTCG GAGGAATGACATGTCATCATCGATGAACTCTAATTCTTCAACCCAATCAGTCAAGGCTGCTTCCAGACCACCAACACCAGTACCAGAATATGAAGAAGAG ATCACAGAACTGAAGCTATCAGTGGACAGCCTCGAAAAGGAGAGAGACTTCTACTTCTCAAAGCTTAGAGACATTGAGCTACTGTGCCAATGCCCTGGCC TTGAAGGCATGCCTGCTGTTGCTGCAATTCAGAAGATACTCTACGCAGCAGACAACGACGGCTCAGCTGCAGCCGAAGCTCAAGCCATGGTGGCCTCTCT CGTTCAGCTACAGAAGGTAGAAGAAGAAGAAGTAGAAGAAGACGAGGAACAAAAGGTGGCATCATCGACAGATTCGCAGAAGCGAAAAGGAATCCGGAAC TTGGATGTCGATGCTGCTGGCATCTCGACCCTGTCTCCTAGGCAACGATTCCCGGAATCAGTCGACGTCCATTCGCCTATTATGAACTACTGA
AA sequence Show only first row Show all	>Lus10011508 pacid=23140422 polypeptide=Lus10011508 locus=Lus10011508.g ID=Lus10011508.BGIv1.0 annot-version=v1.0 MATKIGMMDPAYFVGRSEILAWINSTLKLNLSKVEEACGGAVHCQLMDAVHPGIVPMHKVNFDARSEYEKIQNYKVLQDVFNKLKITKHIEVTKLVKGRP LDNLEFMQWLKHYCDSVNGGLADYNPTERREASKGVKELAKRGGPPSQTSSKASNAAASKAQHHGARRNDMSSSMNSNSSTQSVKAASRPPTPVPEYEEE ITELKLSVDSLEKERDFYFSKLRDIELLCQCPGLEGMPAVAAIQKILYAADNDGSAAAEAQAMVASLVQLQKVEEEEVEEDEEQKVASSTDSQKRKGIRN LDVDAAGISTLSPRQRFPESVDVHSPIMNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	1.7	0.9671
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	2.2	0.9681
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	3.9	0.9668
AT4G02800			unknown protein		Lus10014668 [exp]	5.1	0.9671
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	6.6	0.9588
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	7.2	0.9582
AT2G37960			unknown protein		Lus10021116 [exp]	7.9	0.9613
AT4G17000			unknown protein		Lus10010744 [exp]	8.1	0.9658
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	8.9	0.9669
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	10.0	0.9595

Compare expression of checked genes

Lus10011508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.