Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37250 621 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 615 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 611 / 0 RLK receptor-like kinase (.1) AT4G34220 448 / 2e-147 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 423 / 6e-138 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 339 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 274 / 9e-82 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 263 / 2e-77 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 227 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 205 / 4e-57 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019315 [exp] 1097 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 728 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 719 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 308 / 3e-93 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 270 / 6e-85 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10043480 [exp] 264 / 5e-78 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 263 / 1e-77 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 197 / 1e-53 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 195 / 6e-53 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048800 [exp] 722 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 701 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 535 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 343 / 1e-107 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 333 / 1e-103 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 213 / 2e-59 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 213 / 1e-58 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 205 / 2e-56 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 201 / 3e-55 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 172 / 2e-44 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011509 pacid=23140373 polypeptide=Lus10011509 locus=Lus10011509.g ID=Lus10011509.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCCACCTTCTTCTTCTTCTTCTTCTTCTTCTGCAATTACTTCACTTCTCTTCCGCCATTACCACAGACGGAATCCTCTTACTCTCCTTCA AATTCTCAATCCTCAACGACCCCTTAAACGCCCTCGGAAACTGGAACCCCGACGACCCATCTCCCTGCCTCTGGAACGGTGTCGTTTGTTCCCAAAACGA CGTCGTCTCACTCTCCCTTCCCAACTCCAACCTCGCCGGCTCCATCCCCGCCGATCTCGGCTCGATTCAGAACCTCCAGACGCTGAATCTTTCCAACAAT TCGCTCAATGGGTCTCTCCCTTTTTCAATCTTCAACAATACCCATCTCCGGTTTCTCGACCTTTCCAGCAACCATCTCTCCGATAGTATTCCGGCTGCCG CCGGAAGGCGGCAGAATCTGACTGTGATTTCTCTCCGGGGAAATCGCTTCGAGGGCGAGATCCCTAGTGGTGGGTTTGACTATGTTAGAGCTCTGGACTT GTCTTTCAATCTGTTGACCGGATCTCTGCCTGCTGATTTTGGTGGTCGGAGTCTGGTTTACTTGAACGTGTCTAATAACCGGATCTCTGGCGTTATTCCG GCTGGTTTCGCGGCGGAAATTCCTCGTAATGCGGTGGTGGACCTGTCTTTCAACAATCTCACCGGTGAAGTTCCTGATTCGACGGTTTTTAAAAAGCTCG ACCGACGGAAAAAATCTGCCGGGTTTTTATTCGCCGGGAACTCTGGTCTATGTCGGAAGCCATGCCCGATTTCCTCTTCTCCTCCTGCAATTGCTGTTCT TCCGACGACAATCGCCTCCAACCACGCCGGCTCTGCTTCCAGCGACGAGAAAAGATCAGGACAGAGCAGGTTCAGGACAGGGACGATTGCCGGAATCGTG GTCGGCGACGTAGCTGGAGTTTCGATTCTGTTCGCGGTCTTCTTCTACGTCTATCACTTCGTCCGGAAGCGAAACAATAAGGAATCTGCCATTCGAAACG CCAAGGAATCCGATGACGCCACGTCATCAGATTCATCGTCCGATTCCGAATCCAGAAGGTTCACCAGATGGTCGTGCCTACGGAAGAAGAGCGAAATCGC CGCCGACGACGAAGATTCCGACGAGGTGGATTCACAATTCGCCGCCTCCAGCGGCGTAGGGAGGAAGCTGGTGACAGTCGACGGGGAGAAGGAGCTGGAG CTGGAGACGTTGTTAAGAGCTACGGCGTACATTTTGGGAGCTACGGGTTCGAGCATTGTGTACAAGGCGGTGCTGGAAGACGGCACTTCGTTCGCCGTCC GGCGAATCGGCGAGAATCAGCTAGAAAGGTTTAGGGATTTCGAAAACCAGGTTCGGGTTATTTCCAAATTGGTCCACCCGAATCTGGTTCGAATTCGCGG GTTTTATTGGGGACCTGAGGAGAAGCTTGTGATTTACGATTTCGTCCCCAATGGCAGCCTCGCTAACGCTCGTTACAGAAAAGCCGGAGGATCGTCGCCG TGTCATTTAGCATGGGAGTCAAGGATCAAGATAGCGAGAGGAGTGGCCCGTGGGCTTTCCTTCCTACACGAGAAGAAGCACGTACATGGCAACTTAAAGC CCAAAAACATCCTATTGGGCCACGACATGGAGCCCAAACTCGGAGATTTCGGGCTCGAGAAGCTCCTCTCCGGCGGCGACACCAGCTACAACGGAGGCGT ATCGGCCCGAATATTCGGAAGCAAAAGATCCACTACCTCGCGAGACAGCTTCCCAGACCTGTCGTCGTCCATCGGCCCGAGCCCAAGCCCCAGCCCGAGC TTGATCGGCGGGCTTTCCCCGTACCATGCGCCAGAGTCACTCCGGAGCATCAAGCCCAACCCGAAGTGGGACGTGTACTCGTTCGGGGTCGTACTTCTCG AATTGTTGACGGGGAAGGTGATAGTTGTGGACGAGACGGGCCAAGGGAGCAACGGGCTTGTTGTTGAGGACAAGGGTCGGGCTTTGCGAATGGCTGATGT GGCGATACGTGCTGACGTGGAGGGTCAAGAGGAGGCCTTGTTGGCATGCTTTAAGTTAGGTTATAGTTGTGCTTCTCCTTTGCCTCAGAAGAGACCGACC ATGAAAGAAGCTTTACAAGTTCTTGAGAAGATTCCTACGCCGGTTTCTTCAACTGTGTTCCTTTATGGTCAGTAG
AA sequence Show only first row Show all	>Lus10011509 pacid=23140373 polypeptide=Lus10011509 locus=Lus10011509.g ID=Lus10011509.BGIv1.0 annot-version=v1.0 MAFFHLLLLLLLLLQLLHFSSAITTDGILLLSFKFSILNDPLNALGNWNPDDPSPCLWNGVVCSQNDVVSLSLPNSNLAGSIPADLGSIQNLQTLNLSNN SLNGSLPFSIFNNTHLRFLDLSSNHLSDSIPAAAGRRQNLTVISLRGNRFEGEIPSGGFDYVRALDLSFNLLTGSLPADFGGRSLVYLNVSNNRISGVIP AGFAAEIPRNAVVDLSFNNLTGEVPDSTVFKKLDRRKKSAGFLFAGNSGLCRKPCPISSSPPAIAVLPTTIASNHAGSASSDEKRSGQSRFRTGTIAGIV VGDVAGVSILFAVFFYVYHFVRKRNNKESAIRNAKESDDATSSDSSSDSESRRFTRWSCLRKKSEIAADDEDSDEVDSQFAASSGVGRKLVTVDGEKELE LETLLRATAYILGATGSSIVYKAVLEDGTSFAVRRIGENQLERFRDFENQVRVISKLVHPNLVRIRGFYWGPEEKLVIYDFVPNGSLANARYRKAGGSSP CHLAWESRIKIARGVARGLSFLHEKKHVHGNLKPKNILLGHDMEPKLGDFGLEKLLSGGDTSYNGGVSARIFGSKRSTTSRDSFPDLSSSIGPSPSPSPS LIGGLSPYHAPESLRSIKPNPKWDVYSFGVVLLELLTGKVIVVDETGQGSNGLVVEDKGRALRMADVAIRADVEGQEEALLACFKLGYSCASPLPQKRPT MKEALQVLEKIPTPVSSTVFLYGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37250			Leucine-rich repeat protein ki...		Lus10011509 [exp]	0	1
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	16.2	0.6295
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	26.7	0.5943
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10003313 [exp]	41.7	0.5902
					Lus10037909 [exp]	80.5	0.5421
					Lus10032731 [exp]	224.8	0.4850

Compare expression of checked genes

Lus10011509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.