Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37270 941 / 0 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT5G21930 186 / 1e-49 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 182 / 2e-48 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 171 / 2e-44 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 168 / 2e-43 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT1G63440 150 / 1e-37 HMA5 heavy metal atpase 5 (.1) AT5G44790 134 / 2e-32 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30120 119 / 2e-28 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT2G24520 50 / 4e-06 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT4G30190 46 / 9e-05 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019313 [exp] 1204 / 0 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10023777 [exp] 182 / 4e-48 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10006955 [exp] 176 / 4e-46 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 173 / 5e-45 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10008309 [exp] 145 / 5e-36 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 145 / 6e-36 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031273 [exp] 144 / 1e-35 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 127 / 3e-30 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038070 [exp] 124 / 4e-29 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049000 [exp] 1026 / 0 AT4G37270 1104 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Potri.006G076900 [exp] 196 / 7e-53 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G205400 [exp] 184 / 8e-49 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 176 / 2e-46 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 170 / 2e-44 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G105800 [exp] 159 / 8e-41 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 159 / 2e-40 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 156 / 1e-39 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 154 / 5e-39 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 150 / 2e-37 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10011510 pacid=23140401 polypeptide=Lus10011510 locus=Lus10011510.g ID=Lus10011510.BGIv1.0 annot-version=v1.0 ATGGCTATGGCAGCGTTTGCCTCTGTCTTTATGGGGAATGCGTTGGAAGGAGGATTGCTTCTTGCAATGTTCAATCTCGCTCACATTGCTGAAGAGTTCT TCACCAGTCGATCGTTGGTGGATGTGAAAGAGTTGAAAGAGAATAATCCGGATTCTGCCCTCGTGCTAGACGTTGAAGAGGGGAACGTACCTGATCTCTC GCATTTGTCTTACTCCAGTGTGCCAGTGCATGATATAGAAGTGGGCTCGTATGTTCTGGTTGGAGCTGGTGAGGCCGTGCCTGTAGATTGTCAAATCTTC CAAGGTACTGCAACAATTACTATTGAGCATTTGACTGGGGAAGCAAAACCGATTGAAGCGAAAGTTGGAGATGGGATTCCGGGAGGTGCGAGGAACTTGG ATGGTAGAATGATTGTAAAGGCAACAAAGACATGGAAAGAGTCAACATTAAGTAGAATTGTGCAATTGACAGAAGAGGCACAACAAAACAGGCCAAAACT TCAGAGATGGCTTGACGAGTTTGGTGAGCAGTACAGCAAGGTCGTAGTAGGGTTGTCATTCGCTGTCGCTTTCCTTGGGCCATTGCTTTTCAAGTGGCCG CTCATGAGTACATCAGTCTGCAGAGGATCAATCTACAGAGCACTAGGATTAATGATGGCTGCATCACCATGTGCCTTGGCTGTGGCTCCGTTGGTATATG CCACTGCCATTAGCTCCTGTGCTAAAAAGGGAATATTGCTTAAAGGAGGTCAGGTTCTGGATGCTTTAGCATCTTGCCACACAATTGCATTTGACAAAAC TGGGACGCTGACAACAGGAGGGCTTATGTTCAAAGCAATTGAGCCAATTTACGGACATCAGGTTGGAAAAAATATGACGACCCCTGCTTCTTGCTGCATA CCCAGTTGTGAAAAAGAAGCTCTTGCTGTAGCTGCTGCTATGGAGAAGGGCACTACACATCCTATTGGGAGGGCTGTTGTAGATCATAGCATCGGGAAAG ACCTACCTTCAATCTCTGTTGAAAAATTCGAATACTATCCAGGTAGAGGCCTCATTGCAACATTGAACGACTTCCAGTCAGGAAGTGGAAGAGCTAGATC ATTGAAAGCATCCCTTGGTTCTGTTGAATTCATCACTTCTCACTGTAAATCTGAAGACAAGTCGCGAAAAATTAAGGAAGCTGTCAGAGCTTCTTCTTAC GGAAACGACTCGGTCCATGCTGCTCTTTCCGTCGATGAAAAGATAACACTGATCCATCTCGAGGACAGACCGCGAGAAGGAGTTGCAGACGTCATCTCAG AACTGCAGGACAAAGCAAAGCTCGATGTAATGATGTTAACAGGCGACCACAAATCAAGCGCATGGAGAGTTGCCAAAACCGTGGGCATTACTCAAGTTCA CTGTAGTCTGAAACCAGAAGACAAGCTCAATCATGTAAAGACCATCTCCAGGGACATGGGTGGCGGTCTGATTATGGTGGGCGAAGGTATCAACGACGCC CCAGCTCTGGCCGCAGCGACTGTAGGAATCGTGCTCGCTCAGCGTGCCAGTGCAACAGCAGTAGCCGTTGCAGATGTGTTGCTATTGCGTGACAATATAT CTGTCGTTCCCTTCTGCATTGCCAAGTCCCGTCAAACAAGCTCCTTGGTGAAGCAAAATGTGGCGCTGGCGTTGACTTCCATAATCCTTGCTTCTCTTCC CTCTGTTCTGGGATTCCTCCCACTGTGGTTAACGGTTCTGTTACACGAAGGTGGAACCCTCCTGGTGTGTCTAAACTCGGTCCGAGCACTAAACGAACCG AAATGGTCATGGAAGGAAGACATAAAGCATCAACTCAAATCCCGATTAGTCAACAACAAGAACAACACAAACTCCTCCTCCGCCGATTCTAACATGGTAA ACCCCGAAAACCTATCTTGTACCTGA
AA sequence Show only first row Show all	>Lus10011510 pacid=23140401 polypeptide=Lus10011510 locus=Lus10011510.g ID=Lus10011510.BGIv1.0 annot-version=v1.0 MAMAAFASVFMGNALEGGLLLAMFNLAHIAEEFFTSRSLVDVKELKENNPDSALVLDVEEGNVPDLSHLSYSSVPVHDIEVGSYVLVGAGEAVPVDCQIF QGTATITIEHLTGEAKPIEAKVGDGIPGGARNLDGRMIVKATKTWKESTLSRIVQLTEEAQQNRPKLQRWLDEFGEQYSKVVVGLSFAVAFLGPLLFKWP LMSTSVCRGSIYRALGLMMAASPCALAVAPLVYATAISSCAKKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHQVGKNMTTPASCCI PSCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSISVEKFEYYPGRGLIATLNDFQSGSGRARSLKASLGSVEFITSHCKSEDKSRKIKEAVRASSY GNDSVHAALSVDEKITLIHLEDRPREGVADVISELQDKAKLDVMMLTGDHKSSAWRVAKTVGITQVHCSLKPEDKLNHVKTISRDMGGGLIMVGEGINDA PALAAATVGIVLAQRASATAVAVADVLLLRDNISVVPFCIAKSRQTSSLVKQNVALALTSIILASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEP KWSWKEDIKHQLKSRLVNNKNNTNSSSADSNMVNPENLSCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	0	1
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	1.4	0.9014
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	1.7	0.8834
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	2.4	0.8835
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	2.8	0.8818
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	4.5	0.8764
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	4.9	0.8666
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	14.2	0.8572
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	14.4	0.8553
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	14.4	0.8246
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	14.5	0.8500

Compare expression of checked genes

Lus10011510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.