Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37280 397 / 1e-139 MRG family protein (.1) AT1G02740 285 / 4e-95 MRG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019312 [exp] 363 / 1e-127 AT4G37280 283 / 4e-96 MRG family protein (.1) Lus10019311 [exp] 110 / 2e-30 AT4G37280 107 / 4e-30 MRG family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049300 [exp] 456 / 5e-163 AT4G37280 417 / 2e-147 MRG family protein (.1) Potri.014G022400 [exp] 295 / 3e-99 AT1G02740 314 / 2e-106 MRG family protein (.1) Potri.002G122500 [exp] 143 / 1e-41 AT4G37280 147 / 1e-43 MRG family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05712 [flax] [poplar] MRG MRG CL0049 [flax] [poplar] Tudor PF11717 [flax] [poplar] Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence Show only first row Show all	>Lus10011511 pacid=23140436 polypeptide=Lus10011511 locus=Lus10011511.g ID=Lus10011511.BGIv1.0 annot-version=v1.0 ATGGGCAACTCATCCAAGGACGATTCCGGCAGCGACGGCAAGGCCACTAGCGGCGATACCCCGCCTCCTGACTCCAACCATTTCACCGAAGGCGAGCGCG TCCTCGCCTACCACGGCCCACGAATCTACGAAGCCAAGGTTCAAAAAGCTGAGCTACGGAAGAAGGAATGGAAATACTTCGTTCACTATCTTGGATGGAA TAAGAATTGGGACGAATGGGTAGGCGCTGAGCGATTATTGAAACACAATGAAGAAAATGTATTGAAGCAGCAGGCTCTAGACAAAAAGCAGAACATAGAC AAGAGTTCAAGGCCAGGACGCTCACAAAACAAGCCGAAAAATTCTGCTGATACAAAGACTGACAAGGAAGATACAAGAGGCAATGCACCAAAAAGCAAAA GGCGCAAGACTGACTCGAACGCAGAGAAGGGCAATTCCACCACTGATAAGCTAGCCAAGATCCAAATTCCATCCACTCTTAAGAAGCAACTTGTTGATGA CTGGGACTTTGTCACTCAACAGGAGAAGCTTGTCAAACTTCCAAGATCACCAACTGTAGACGACATTTTGACCAAGTACCTCGAGTACAGGTCTAAGAAA GAAGGCGTAATGACTGATTCCGTCGGAGAAGTGTTGAAAGGAGTACGGTGCTACTTTGACAAAGCATTGCCAGTGATGCTCCTTTACAAAAACGAGCGGC AACAGTTCCAGGATGCTGTCAAAGAAGATGTCTCTCCGTCAACCATATATGGCGCTGAACATCTGTTGCGCCTATTCGTTAAGCTACCCGAGTTATTGGC ATATGTGAATATTGAAGAGGAGACACTGACTCCACTTCAGCAAAAACTACTCGACTTTCTCAAATTTCTTCAGAAGAACCAGAGTACCTTCTTCCTATCT GCATACGATGGGTCAAAAGCTTCCGAAAGCAAAGACAAAGGCAAAGATGAGTGA
AA sequence Show only first row Show all	>Lus10011511 pacid=23140436 polypeptide=Lus10011511 locus=Lus10011511.g ID=Lus10011511.BGIv1.0 annot-version=v1.0 MGNSSKDDSGSDGKATSGDTPPPDSNHFTEGERVLAYHGPRIYEAKVQKAELRKKEWKYFVHYLGWNKNWDEWVGAERLLKHNEENVLKQQALDKKQNID KSSRPGRSQNKPKNSADTKTDKEDTRGNAPKSKRRKTDSNAEKGNSTTDKLAKIQIPSTLKKQLVDDWDFVTQQEKLVKLPRSPTVDDILTKYLEYRSKK EGVMTDSVGEVLKGVRCYFDKALPVMLLYKNERQQFQDAVKEDVSPSTIYGAEHLLRLFVKLPELLAYVNIEEETLTPLQQKLLDFLKFLQKNQSTFFLS AYDGSKASESKDKGKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	2.2	0.8549
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	4.5	0.8527
AT2G24970			unknown protein		Lus10026900 [exp]	5.7	0.8167
AT1G50910			unknown protein		Lus10011153 [exp]	5.8	0.8160
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	9.2	0.8222
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	10.2	0.8366
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10023618 [exp]	11.2	0.7754
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	11.7	0.8450
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	12.0	0.8452
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	13.0	0.8025

Compare expression of checked genes

Lus10011511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.