Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 632 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 597 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 160 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT2G36670 148 / 7e-38 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 143 / 3e-36 Eukaryotic aspartyl protease family protein (.1) AT3G02740 130 / 7e-32 Eukaryotic aspartyl protease family protein (.1) AT1G05840 120 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT5G36260 115 / 4e-27 Eukaryotic aspartyl protease family protein (.1) AT3G25700 110 / 1e-25 Eukaryotic aspartyl protease family protein (.1.2) AT1G65240 109 / 5e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019309 [exp] 1145 / 0 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 639 / 0 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 632 / 0 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 142 / 1e-35 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 141 / 1e-35 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 142 / 1e-34 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 135 / 1e-33 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 135 / 1e-33 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 132 / 2e-32 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144600 [exp] 692 / 0 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 625 / 0 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 156 / 8e-41 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 155 / 2e-40 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 138 / 1e-34 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 129 / 1e-31 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 126 / 9e-31 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 123 / 2e-29 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 107 / 2e-24 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 107 / 3e-24 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10011513 pacid=23140440 polypeptide=Lus10011513 locus=Lus10011513.g ID=Lus10011513.BGIv1.0 annot-version=v1.0 ATGGCGCGGAGGCCAAATTTAGCTTCACTTCTCCTCCCATTCCTCATCGCCTTCTTATGCTCTCCGATCCCCTTAACCGCTCTCTTCGAATCTCCCGCCG GCCGCCACCACCACCGCGTCTCATCCGCCAATGCCACCGCGATGATACTCCCGCTCTTCCCTTCCGTTCCCAGGACGTTCGCCAACCCTAACTATCGCAG ACATCTACAGAGATCGTTACGTGGCGTTTCTAGCTCCCTTCCTCATGCTCGCATGGGACTGTACGACGATCTCCTCATCCACGGGTATTACACAACGCAC GTATGGATTGGGACTCCACCTCAGAAGTTCTCTTTGATTGTTGATACAGGCAGCACTGTCACTTATGTACCTTGCTCCACTTGCGAGCAATGCGGCCACC ATGAGGATCCGAAATTCGAACCGGAATCGTCAAGCACTTACGAGCCTGTGAAGTGTACGATGGACTGCAATTGTGATATTGATAAGGGGGTCTGCATTTA CGAGAGGCAATATGCTGAATTGAGCTCCAGCAGTGGTGTCCTTGGTGGGGACCTGTTATCATTCGGGAACGAGAGTGGGCTCGAGCCTCACCGAGCTGTT TTCGGCTGTGAGAATTCGGAGACAGGCGATCTCTATAGCCAACATGCTGACGGAATTATGGGGTTGGGACGAGGTGATCTGAGTGTTGTGGATCAGCTTG TTGGGAAAGGTGTGATCAACGATTCGTTCGCATTGTGCTATGGTGGAATGGACATTGGAGGAGGTGCCATGGTCCTCGGTTCGATACCTGCACCTTCTGG CATGGCATTTGCTTATTCAGATCCTTCCCGCAGTCCATACTACAATATTGATTTGAAGGAGATACATGTTGCCGGCAAGAAATTGCAGCTGGACACCCAA GTTTTCAATGAAAAATATGGGACCGTCTTGGATAGTGGTACCACATATGCTTACCTACCGGAAACAGCGTTTTCTGCCTTTAAGGATGCTATAATGAAGG AACTGCATTCCTTGAAGCAGATTCAAGGTCCCGATCCTAATTATAATGATATTTGTTTTTCTGGAGCTAGCAGTAATGCACTGGAAATGTCACGTTCCTT CCCAAGCGTCGAGTTTGTATTTGACAAGAAGCAAAAAATTCTGCTGTCTCCTGAAAATTACTTGTTTCGGGTGAGTGTTTCAAATTCTTATTTCAGCATA GTGTCCACTGATCGATGGATTGAGCTTGATTGGTGTGAAGCTTCTCTTGATTTGTTATGGATACTCTTCTACATTGTTATACAGCACTCAAGGGTGAAAG GTGCTTACTGTCTAGGGGTGTTCCCCAATGTAAACGATCCAACAACACTTCTTGGAGGAATAGTTACTCGAAATACTCTTGTTGTATACGACCGCGAGAA CACGAAAGTGGGCTTTTGGAAGACTAATTGTTCGGAGCTATGGGAAAGACTTCAAGGAGCTAGTTCCTCTCCAGCGCAATCACCACATCCATCTTCCGAT GAACACAACCAGACCAATGAAGCTTCACCGACTTTACCTCCTACTCTAAATGACCAACCACAGTATGTTCTTCCAGATGGAATCTACATTGAACAAATCG AATTCGAGATGTCATTTAATGTCAAATACTCTGATCTGAAGAACAAGCTTGACAAACTGACGGAATCCATTGCTCACGAGTTGAGAATCAACACTTCACA GGTCCACGTGGAAAGCCTTGCTCCGGATGGAAATGCTTCGCTCATCCGGTGGTCCATAATTCCTGTAGGATCTGATAACCACATCTCTAATGGCACCGCT CTCAACATCATTACTCGAGTTGTTAAGCACCAAATGCAGCTTCCTGCTTCGTTCGGAACATACAAGTTAGTCCACTGGAAAGTTCAGGAACCTGAAGAAC AACAGACATGGTGGGAGACACACTACCTTGCCGTGGTTGTAGCTGGTACGATAGCACTGGTCATCGTGTTATCGGGGATCGGTTCGTGGTTGGTTTTGCA GCGTAGGCGAAGCGCAACGATGGCTTACGAACCCGTCACTACTGATGCTGTTGCTGAGCAGGAATTGCAGCCTCTATGA
AA sequence Show only first row Show all	>Lus10011513 pacid=23140440 polypeptide=Lus10011513 locus=Lus10011513.g ID=Lus10011513.BGIv1.0 annot-version=v1.0 MARRPNLASLLLPFLIAFLCSPIPLTALFESPAGRHHHRVSSANATAMILPLFPSVPRTFANPNYRRHLQRSLRGVSSSLPHARMGLYDDLLIHGYYTTH VWIGTPPQKFSLIVDTGSTVTYVPCSTCEQCGHHEDPKFEPESSSTYEPVKCTMDCNCDIDKGVCIYERQYAELSSSSGVLGGDLLSFGNESGLEPHRAV FGCENSETGDLYSQHADGIMGLGRGDLSVVDQLVGKGVINDSFALCYGGMDIGGGAMVLGSIPAPSGMAFAYSDPSRSPYYNIDLKEIHVAGKKLQLDTQ VFNEKYGTVLDSGTTYAYLPETAFSAFKDAIMKELHSLKQIQGPDPNYNDICFSGASSNALEMSRSFPSVEFVFDKKQKILLSPENYLFRVSVSNSYFSI VSTDRWIELDWCEASLDLLWILFYIVIQHSRVKGAYCLGVFPNVNDPTTLLGGIVTRNTLVVYDRENTKVGFWKTNCSELWERLQGASSSPAQSPHPSSD EHNQTNEASPTLPPTLNDQPQYVLPDGIYIEQIEFEMSFNVKYSDLKNKLDKLTESIAHELRINTSQVHVESLAPDGNASLIRWSIIPVGSDNHISNGTA LNIITRVVKHQMQLPASFGTYKLVHWKVQEPEEQQTWWETHYLAVVVAGTIALVIVLSGIGSWLVLQRRRSATMAYEPVTTDAVAEQELQPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	0	1
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	6.9	0.7182
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	14.2	0.7403
					Lus10027520 [exp]	17.7	0.6944
AT2G37370			unknown protein		Lus10025285 [exp]	19.0	0.7138
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10008279 [exp]	19.1	0.6957
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	20.3	0.7375
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	22.8	0.6160
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	24.4	0.7088
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	25.9	0.6526
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	26.5	0.6600

Compare expression of checked genes

Lus10011513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.