Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 902 / 0 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 589 / 0 ARM repeat superfamily protein (.1) AT4G37040 525 / 3e-178 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 377 / 3e-121 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 343 / 2e-108 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT3G54790 337 / 2e-101 ARM repeat superfamily protein (.1.2) AT2G45240 273 / 5e-82 MAP1A methionine aminopeptidase 1A (.1) AT3G01400 270 / 1e-81 ARM repeat superfamily protein (.1) AT4G16490 253 / 1e-73 ARM repeat superfamily protein (.1) AT5G58680 241 / 4e-71 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019308 [exp] 2201 / 0 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021701 [exp] 399 / 2e-129 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10011516 [exp] 396 / 4e-124 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10035045 [exp] 353 / 2e-112 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10021657 [exp] 285 / 4e-86 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10032023 [exp] 280 / 2e-85 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 276 / 7e-84 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 262 / 2e-77 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10001650 [exp] 252 / 2e-74 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051000 [exp] 1103 / 0 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 1061 / 0 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 588 / 0 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G137400 [exp] 557 / 0 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.008G117200 [exp] 387 / 5e-125 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.005G225400 [exp] 393 / 2e-121 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G067300 [exp] 283 / 1e-85 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.002G118800 [exp] 265 / 1e-79 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 259 / 2e-77 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 266 / 1e-76 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP) CL0020 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24 CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10011514 pacid=23140409 polypeptide=Lus10011514 locus=Lus10011514.g ID=Lus10011514.BGIv1.0 annot-version=v1.0 ATGGAGATATCTCTATTAAAAGTGCTTCTCAACAACATCTCCTCTTTCTCTCATCTATCGTCGTTTGAGAACGTGAACTCTGGTCTGGCCCAGAAGTATT TGCAGAAGGCAGAAGAAATATTTAAGCTGCTTAGGCCAATACTTGATTCTGTCGTCGATTGTGAAATAGCTTCCAATGAGGTGCTTAATAAAGACTTTGC AGAGTTAAGCCAATCTATTGATGAGCTCAGGGAGCTCTTCGAGACCAGCCAACCATTGTCGAGCAAAGTCTATTTGGCTCTTCAAACTGAATCATTGTTG TCAAAGATTCGCAATTCTGGTCTGGATATTTTTGAATTCTTGAAGTCTACCGATGAGCATTTGCCTGAAGAATTGAGTTCATCATCTATTGAGTATTGCA TACAGAAAATTAAGCAACTGGGACTGGATCAAACGTCCTCTACAGTTAAGGAAGCCTTAAATGATCAAGATTGCTCTGATATCTTGGTCAAAATCGCCGA GAGTTTGAGCTTGAGAACCAACCAGGAGATTCTGATTGAAGCAGTGGCACTTGAAAAACTGAAGGAGACTGCTGAACAAGCTGAAAAAAATGGGGAGGTC GAGTTCTTCGAACAACTGATTGCTCTGGTAACCAGGATGCATGATCGCCTTGTTCTAATCAAACAGTCCCAATCCAGCAGCCCTGTCCCTATACCTCCCG ATTTCTGCTGTCCTCTATCGCTCGAGTTGATGACGGATCCTGTAATTGTGGCATCGGGGCAAACCTACGAACGGGCGTTCATAAAAAGCTGGATCGAACT CGGCCTTACAGTGTGTCCCAAGACAAGACATACTTTGGGACACACTAATTTGATACCGAACTACACCGTCAAGGCCCTGATAGCAAATTGGTGCGATATA AACAAAGTCAAGCTACCGGATCCTGTCAAGTCTGTGCAGCCTTCACCGATTCTTGTCCATCTCGGCTCTGGCTCGCCTAAAGAACCAACAAAGTCCATAA GCTCATCTGGATTCTCCCCGGCTGGTTTTCTCAGGGAAGGAAGAAGATCCCCTATACATCCGCGTTCCACTTCCGACAGTGCTTTACCCGGTATAGTTGG AAATGGGCAGGGAATCCATGATATTGATCCTGAAGAAAGGTTTGGTAAGTCAGAGGAAAGTATCATAGATTCCATTGTTCAATCCTCTGCATCACCATCT AGAATGGAAGTTTCAGATTCTGCTGGCGAATCGCTTCCTAGGAGCAATGGCCCGACTACGAATGGAACATTTTCTCGAGGATCATCAGGAGATGCTAATG ACTCTCTTGAGGTGTCAAATCATCTTACTTCATACAACAGCGACACATCCGGTGAAGTGAAACCCGAACCACCGATTTCTTCTGCCTCGAATAGTTCTCG GGTGGAACCGGTATTCTCTCCTCGATTCGTTGAGGGCACACGGTCTCGAGGCCAGTCACTTTGGCGCCGTCCAACAGATAGACTTCCTCGGATCGTCCCT TCTCCTTCTACCGAAACAAGGGCGGATCTTTCCGGCCTCGAAACCCAAGTCAAGAAGCTGGTTGAAGATTTGAAGAGCTATTCAATCGACACGCAAAGAG AAGCAACCGAGCAACTCCGGTTACTCGCTAAACACAACATGGATAACCGGATTGTAATCGCCAACAGCGAGGCGATTACTTTGCTAGTGAACTTGCTCCG ATCAACTGACATGAAGATTCAGGAGAATGCAGTTACAGCACTTCTGAATTTATCCATCAACGACAACAACAAAACCGCCATTGCCGATGCTGAAGCCATA GAGCCGTTAATCTACGTCCTCGAAACGGGAAGTCCAGAAGCCAAGGAGAATTCAGCCGCTACTCTGTTTAGTCTCTCGGTCATCGAGGAAAACAAAGTTC GAATTGGAAGATCCGGTGCGGTCGGGCCGCTGGTTGACCTATTAGGGAACGGAACTCCGAGGGGAAAAAAAGATGCTGCCACTGCATTGTTTAACTTATC GATCTTCCACGAGAACAAGGCAAGGATCGTCGCTGCGGGAGCGGTTAAGCACCTTGTGGAGCTGATGGACCCGGCTGCCGGAATGGTGGATAAGGCAGTT GCGGTTCTGGCTAACCTCGCGACAATTCCCGAGGGGAGGAATGCAATCGGCCAGCAAGGCGGGATCCCGGTCTTAGTCGAAGTCGTTGAGTTAGGGTCAG CGAGAGGGAAAGAGAACGCGGCGGCTGCTCTGTTGCAGCTTTGCACGAACAGTACGAGGTTCTGCAACATGGTGCTCCAAGAAGGTGCTGTGCCGCCGTT GGTGGCTTTGTCGCAGTCCGGTACTCCGAGGGCGAAGGAGAAGGCGCAGTTGCTTCTTAGCTACTTCAGAAACCAACGGCATGCTGGAGGACGGATTCAT GTTTCCATGAGATTTTCCAGGGCGCTTTCAGGGTTAACCAACTTTATTTTTAATAGAAGAATCGTACCTGGAGCACCCAACGTGAAGCGCAAAATTCTTC AGCCAGGGAAACTTTCTCCTCGCCGACCTGTTCCTGATCATATTCCCAAGCCTCCCTATGTCAACACTAGGCAGTCGCCTGGAATCTCTAGTGGCCCTGA AGTGCACGATTTGAAGGGGATAGAATGCATGAGAGCTTCTGGAAGGCTTGCAGCTCAGGTTCTTCAGTATGCCGGGACTCTAGTAAAGCCAGGTGTAAAG ACTGACGAAATCGATGAAGCAGTACACCAAATGATTATTGACAATGGTGCATATCCCTCGCCTCTAGGATATGGCGGTTTTCCAAAGAGTGTATGCACTT CAGTGAATGAGTGCATTTGCCATGGGATTCCTGACTCCCGTGAGCTCGAGGATGGTGACATTATCAACATTGATGTTACTGTTTATTTAAATGGTTATCA TGGTGATACTTCGGCAACTTACTTTTGTGGCGATGTTGACGATAAGGCCAGAAACCTTGTTCAGGTGACCAAAGAATGTCTCGATAAAGCTATAGCAATT TGTGCACCGGGAGTGGAGTTGAAGAAAATTGGCAAGGCTATACATGATCATGCAGATAAACATCGTTACGGTGTTGTTAGAACCTTTGTTGGACATGGTG TTGGGCGAGTTTTCCATGCTGATCCTGTTGTTCTGCACTACAATGCTGATGTTAACAGTATGACAGGGAACAGAGAGGGTGGGCGCATGCAGCTGAATCA AACCTTCACCATTGAGCCAATGCTGACAATGGGGAGCATTAATCCTGTGATGTGGGACGACGAATGGACGGTGGTGACCGAAGATGGAAGCTTGTCAGCA CAGTTCGAGCATACGATTCTGATAACTGAAGGTGGAGCTGAGATATTGACCCAATGTGAATGA
AA sequence Show only first row Show all	>Lus10011514 pacid=23140409 polypeptide=Lus10011514 locus=Lus10011514.g ID=Lus10011514.BGIv1.0 annot-version=v1.0 MEISLLKVLLNNISSFSHLSSFENVNSGLAQKYLQKAEEIFKLLRPILDSVVDCEIASNEVLNKDFAELSQSIDELRELFETSQPLSSKVYLALQTESLL SKIRNSGLDIFEFLKSTDEHLPEELSSSSIEYCIQKIKQLGLDQTSSTVKEALNDQDCSDILVKIAESLSLRTNQEILIEAVALEKLKETAEQAEKNGEV EFFEQLIALVTRMHDRLVLIKQSQSSSPVPIPPDFCCPLSLELMTDPVIVASGQTYERAFIKSWIELGLTVCPKTRHTLGHTNLIPNYTVKALIANWCDI NKVKLPDPVKSVQPSPILVHLGSGSPKEPTKSISSSGFSPAGFLREGRRSPIHPRSTSDSALPGIVGNGQGIHDIDPEERFGKSEESIIDSIVQSSASPS RMEVSDSAGESLPRSNGPTTNGTFSRGSSGDANDSLEVSNHLTSYNSDTSGEVKPEPPISSASNSSRVEPVFSPRFVEGTRSRGQSLWRRPTDRLPRIVP SPSTETRADLSGLETQVKKLVEDLKSYSIDTQREATEQLRLLAKHNMDNRIVIANSEAITLLVNLLRSTDMKIQENAVTALLNLSINDNNKTAIADAEAI EPLIYVLETGSPEAKENSAATLFSLSVIEENKVRIGRSGAVGPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVAAGAVKHLVELMDPAAGMVDKAV AVLANLATIPEGRNAIGQQGGIPVLVEVVELGSARGKENAAAALLQLCTNSTRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQLLLSYFRNQRHAGGRIH VSMRFSRALSGLTNFIFNRRIVPGAPNVKRKILQPGKLSPRRPVPDHIPKPPYVNTRQSPGISSGPEVHDLKGIECMRASGRLAAQVLQYAGTLVKPGVK TDEIDEAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRELEDGDIINIDVTVYLNGYHGDTSATYFCGDVDDKARNLVQVTKECLDKAIAI CAPGVELKKIGKAIHDHADKHRYGVVRTFVGHGVGRVFHADPVVLHYNADVNSMTGNREGGRMQLNQTFTIEPMLTMGSINPVMWDDEWTVVTEDGSLSA QFEHTILITEGGAEILTQCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	0	1
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	5.3	0.8388
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	6.2	0.8686
AT3G04310			unknown protein		Lus10004401 [exp]	8.7	0.8609
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	10.2	0.8083
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	10.4	0.8599
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	10.8	0.8771
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	14.8	0.8312
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	14.9	0.7989
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	15.0	0.7924
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	19.8	0.7874

Compare expression of checked genes

Lus10011514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.