Plant FIBer expression Database

Lus10011515 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64550 550 / 0 loricrin-related (.1)
AT5G09670 533 / 0 loricrin-related (.1.2)
AT1G64140 387 / 6e-127 unknown protein
AT4G12020 207 / 7e-57 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019307
[exp]
856 / 0 AT5G64550 639 / 0.0 loricrin-related (.1)
Lus10032329
[exp]
399 / 5e-131 AT1G64140 690 / 0.0 unknown protein
Lus10024712
[exp]
210 / 2e-63 AT1G64140 298 / 2e-97 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G023300
[exp]
642 / 0 AT5G64550 716 / 0.0 loricrin-related (.1)
Potri.001G206600
[exp]
603 / 0 AT5G64550 675 / 0.0 loricrin-related (.1)
Potri.001G097200
[exp]
387 / 3e-126 AT1G64140 718 / 0.0 unknown protein
Potri.003G134200
[exp]
382 / 2e-124 AT1G64140 690 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10011515 pacid=23140394 polypeptide=Lus10011515 locus=Lus10011515.g ID=Lus10011515.BGIv1.0 annot-version=v1.0
ATGGCTCTCAACAGCAATGAACATGTGAAGAATGACACCACCTTGAGCTTGAACTTTCTTGGCTACCAAGGGAACGGTACCTCTGGCAGTTTTAGCGGAG
GCAATCGAAGCAATCTCGATATTGATCTTGGGAATGGCACGGACGATGGATGCAAATTGGTGCTCGGTTTAGGTCCTTACAACAATGTCGGAGTGGTTAG
TAGCAGCAGCAGTAAGCCAAAGGGATCTCTTGCCTCCGGTGTGTCGTGGGGAGGTGATTCCATCTTAAAGCTCGGCCTTTCTGGAGTAGCTAATGATTCG
TCGAGCGGTGGAGTTGATAGTTCTGTTGTTACACAGACCAATCTGAAAGTACTACCTGTTGTAGATGAGGGTTCTACCACGGCGAAGAAATCCGGAGGAT
ACATGCCTTCGCTTCTCTTGGCCCCACGAATGGACTATCCGAAAGTTCCACCACAGGCGGAAAGTAACGATTTCGGAACCAAAATTACTCATTCTTCTGA
GTTGGAACCGAGTTATGAACCATCTGCTACCACAGATTTCTCAATGAGCTCAGCCTCTGAGCAGGCAACTACGACAGCAACATCTGGAAGCCAGCGGTCC
AACAATCCGAAGAAATGCAAATTCGTCGGATGTTTGAAAGGAGGACGTGGCGCATCGGGGCTATGCATTGGCCACGGCGGAGGGCAAAGATGTCAAAAGC
ACGGATGCAATAAGGGAGCCGAGAGCCGGACAGCGTATTGCAAGGCACACGGTGGTGGAAGGAGATGCGATTACTTGGGCTGTACGAAAAGTGCCGAGGG
AAAAACTGACTTTTGCATCGCGCATGGAGGAGGGAGAAGGTGTGGATACGATGGAGGGTGCGCGAAAGCCGCGAGAGGGAAGTCCGGATTGTGCATTCGA
CACGGTGGTGGGAAAAGGTGTAAAGTCAACGACTGTACGAGAAGCGCAGAAGGACATGCTGGTTTGTGCATTTCGCACGGTGGGGGGAGACGGTGTCAGC
ACGAGGAGTGTTCGAAGGGCGCTCAAGGGAGTACGAAGTTTTGCAAAGCTCACGGAGGAGGGAAGCGTTGCGTATTCGCAGGATGCACGAAAGGAGCGGA
AGGGAGTACACCGTTGTGTAAGGCGCACGGTGGAGGGAAGCGATGTTTGTTCGATGGTGGCGGGATTTGTCCGAAGAGTGTTCATGGAGGGACGAGTTTT
TGTGTCGCGCATGGTGGTGGGAAGAGATGTGTGGTCCCTGGTTGCACGAAGAGTGCAAGGGGGAGGACGGATTGTTGCGTTAGGCACGGTGGAGGGAAAA
GGTGCAAGTTTGGAAATTGCGGTAAGAGCGCTCAAGGGAGCACGGATTTCTGTAAGGCGCACGGTGGTGGTAAGCGATGCTCGTGGGGCGGTGGAGGATG
CGAGAAGTTTGCCCGAGGGAAGAGCGGTCTTTGCGCTGCTCACGCCACGAGCAGCGCAAAGAGTACTGGAGGTGGTGGTGGTCTGATACGATCGGGGCTA
TTCCATGGCCTCGTCGTATCCGGTAGCAGCAGCGCTGAGAACCATAGCGCGATCTCGAACAGCTGTATCGAGTCGTTTGAGCCACCTGCAAAGCGTCAGC
ATATGATGATACCACCACAGGTATTGGTACCGCTTTCAATGAAATCGTCGCCGTCTTATTCGAGTTTTTCAAGTAGGAACGACGGTTCGAATAAGAGTTT
GGATGAGATGGTGGTTCCTGAAGGGAGAGTTCATGGAGGGGGACTGATGTCATTGTTTGGTGGGAATCTGAAGAATGTGGGAATCTGA
AA sequence
>Lus10011515 pacid=23140394 polypeptide=Lus10011515 locus=Lus10011515.g ID=Lus10011515.BGIv1.0 annot-version=v1.0
MALNSNEHVKNDTTLSLNFLGYQGNGTSGSFSGGNRSNLDIDLGNGTDDGCKLVLGLGPYNNVGVVSSSSSKPKGSLASGVSWGGDSILKLGLSGVANDS
SSGGVDSSVVTQTNLKVLPVVDEGSTTAKKSGGYMPSLLLAPRMDYPKVPPQAESNDFGTKITHSSELEPSYEPSATTDFSMSSASEQATTTATSGSQRS
NNPKKCKFVGCLKGGRGASGLCIGHGGGQRCQKHGCNKGAESRTAYCKAHGGGRRCDYLGCTKSAEGKTDFCIAHGGGRRCGYDGGCAKAARGKSGLCIR
HGGGKRCKVNDCTRSAEGHAGLCISHGGGRRCQHEECSKGAQGSTKFCKAHGGGKRCVFAGCTKGAEGSTPLCKAHGGGKRCLFDGGGICPKSVHGGTSF
CVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCKFGNCGKSAQGSTDFCKAHGGGKRCSWGGGGCEKFARGKSGLCAAHATSSAKSTGGGGGLIRSGL
FHGLVVSGSSSAENHSAISNSCIESFEPPAKRQHMMIPPQVLVPLSMKSSPSYSSFSSRNDGSNKSLDEMVVPEGRVHGGGLMSLFGGNLKNVGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64550 loricrin-related (.1) Lus10011515
[exp]
0 1
AT1G71180 6-phosphogluconate dehydrogena... Lus10001349
[exp]
2.8 0.8495
Lus10014600
[exp]
3.2 0.8288
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10012580
[exp]
5.2 0.8253
AT4G04955 ATALN allantoinase (.1) Lus10025648
[exp]
7.3 0.7674
AT3G05670 RING/U-box protein (.1) Lus10015213
[exp]
11.7 0.8106
AT1G77180 SKIP chromatin protein family (.1.2... Lus10027158
[exp]
13.7 0.8222
AT5G59550 zinc finger (C3HC4-type RING f... Lus10004712
[exp]
15.7 0.8131
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Lus10038866
[exp]
15.8 0.7827
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Lus10005161
[exp]
16.9 0.7768
AT1G78310 VQ motif-containing protein (.... Lus10010346
[exp]
17.7 0.7680

Lus10011515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.