Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 350 / 1e-109 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 305 / 7e-94 ARM repeat superfamily protein (.1) AT3G54790 254 / 1e-74 ARM repeat superfamily protein (.1.2) AT3G01400 220 / 2e-65 ARM repeat superfamily protein (.1) AT4G16490 216 / 6e-63 ARM repeat superfamily protein (.1) AT5G58680 200 / 4e-58 ARM repeat superfamily protein (.1) AT3G54850 204 / 5e-57 ATPUB14 plant U-box 14 (.1) AT3G46510 196 / 9e-54 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 178 / 9e-49 ARM repeat superfamily protein (.1.2) AT1G23030 179 / 3e-48 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 395 / 9e-124 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 392 / 6e-123 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 272 / 9e-81 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 261 / 1e-76 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 223 / 8e-67 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 216 / 3e-63 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10010499 [exp] 211 / 1e-60 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10032023 [exp] 205 / 6e-60 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 207 / 9e-58 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144700 [exp] 371 / 2e-117 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 368 / 2e-116 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 285 / 1e-85 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 285 / 3e-85 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G016400 [exp] 211 / 5e-62 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.016G010800 [exp] 213 / 1e-61 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.002G118800 [exp] 209 / 2e-61 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 211 / 7e-61 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 205 / 3e-57 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 205 / 5e-57 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10011516 pacid=23140382 polypeptide=Lus10011516 locus=Lus10011516.g ID=Lus10011516.BGIv1.0 annot-version=v1.0 ATGGATTCGGAGGTATCTCTCTTACAGCTGCTTCGCAACAATATTTCCTCATTTTCTCTTGAGAACGTGAACTCTGGTCTGGCCCAGAAGTGTTTCAAGA GGGCAGAAGAGTTGCTGAAGCCGCTAAAGCCAAAAATTGATTCTTTTGTTTATTTGGATTTAGCTTCTTCCAATAAGGAGGTGCTTGGTAAAGCCTTTGC TGAGTTGAATCGGTATATCTCTGAGGTCAAGGAGCTCTGTCGGAAATGGAAGCCGTCCTCCAGCAAACTCTTTTTGGTTCTTCAAACCGAATCATTGCTG TCAAGGATTCGCAACTTGGGTCTGGATATTGCTGAGTTCTTTAAGTCTGACGACAATGAACAATCGAGTTCATCATCGTCATCTACGGAGTACTGCATAC AGAAGCTTGAGGACTTGCCACTGGAAGAAACGTCATTGACTGTTAAGGCGGCTATAAAAGATCAAGTTGAAGGTGTTGGAATGGGGTCTGATATCTTAGC TGAAATCGCTGACAGACTGAGCTTGAGAACCAATCTGGAGATTCTGATAGAGCTAGTGGCATTCGAGAATTTGAAGGAAGCTGCAGAACAAGCTGAAAGA AGTGAGGGAGATGAGTTATTCGATCAACTGATTGGTCTGGTGACCAGGATGTATGATCAGATGATTGTTCGAGTGCAAAAGTTCGAAACAAGGGAGACTC ATGTTTTTGTTTGGTGGGAATCTGAAGAATGTGGTTCTTCAAAACTGCTCAAATCTTTCAATACAATAATATTTCAGTCTTACTTTGTTTCTATTGTTAG GGAGAGAAAACTATTGAGGAAACCCATCCTCCAAAGGCTTCCCTTTAAAAGGAGGCTGCCAGGCCTCTCTGCAAATGGAAAAATGGAGACTGAACACCAT GATGCTGATCAAGCTGAAGCAGATCCAAACAATTCACTGTTCCGGAGCCGTACATTCCCTCGGTACTGCCCCAAACTCCGCCCTGCAACTCAGACACAGT ACATTCCAGCCACTGTTATCAACTATCACTACTACTCTGGCTCCAGCGCTACTCCATCCACCTCCAACGACATCAGCTCCATCTCCTCATCATCTTTATC CGCCGGTAGCTTCTTCTTCAGCATCTCCTCTTCGTCGACCCCCAGTTTCTTCTGTACCCCTGAATCCCAAGTCAAGAAGTTGGTTGAAGACCCGAACAGC ACGGTTAACACCCAAAGAAAAGCAACGAGGCAGCTCCGATTACTTGCGAAACTTAACAACAACCAGATTGTAGTAGCCAGCAGAGAGGCTATCGCCTTGC TGGTGAAGTCACTCCGTTCAACGGACATGAAGATTCAGGAAAATGCCGTCACCAGACTTATGAACTTGTCCATCAACAACAAAAATAAAACAGCCATTGC CGACGCAGAAGCCATCGAGTCATTCATTTATGTCCTCAAAACTGGGAGCCCGAAAGGCAAGGAGAACTCCGCTGCCACGCTGTTTAGCCTGGCTGTCGTG GAAGAAAACAAGGTCGGGATCGGAAGATCGGGTGCAATTGAACCGCTGGTTGATCTGTTGGGGAATGGAACCCTGATAGGAAAGAAGATTGCGGCTACAG CTTTGTACAGCCTATCGATGTACGACGAAAACAAGGCGAGGATCGTTGCTGCTCATGGTGTTGACCACCTTGTTGATCAGCTGATGAACCCAGCAGCCGG GATGATGAACAAAGCAGTCGCCGTTCTAGCAAACTTGGCAACCATCCAGGAGGGAAGAAATGCCATCGTTCGGGATGGTGGGATCCCTGTCTTGGTCGAA GTAGTCGGGCTAGGCACCGCAAGAGGGAAAGAGAACGCAGTAGCTGCTCTTCTGCGGCTTTGCAAGGACAGTTTCAGGTTCTGCAACATGGTGATCGAAC AAGGTGCTCTGCCGCCATTGGTGGCATTGCTGGAGTCTGGACCCCAGAGGGCTAAGGAGAAGGCGCAGTTGCTTCTTAGGTACTTGAGAAACCCAAGGGG TCGGAACTGGTTGAGATATATCATATATGGTTAA
AA sequence Show only first row Show all	>Lus10011516 pacid=23140382 polypeptide=Lus10011516 locus=Lus10011516.g ID=Lus10011516.BGIv1.0 annot-version=v1.0 MDSEVSLLQLLRNNISSFSLENVNSGLAQKCFKRAEELLKPLKPKIDSFVYLDLASSNKEVLGKAFAELNRYISEVKELCRKWKPSSSKLFLVLQTESLL SRIRNLGLDIAEFFKSDDNEQSSSSSSSTEYCIQKLEDLPLEETSLTVKAAIKDQVEGVGMGSDILAEIADRLSLRTNLEILIELVAFENLKEAAEQAER SEGDELFDQLIGLVTRMYDQMIVRVQKFETRETHVFVWWESEECGSSKLLKSFNTIIFQSYFVSIVRERKLLRKPILQRLPFKRRLPGLSANGKMETEHH DADQAEADPNNSLFRSRTFPRYCPKLRPATQTQYIPATVINYHYYSGSSATPSTSNDISSISSSSLSAGSFFFSISSSSTPSFFCTPESQVKKLVEDPNS TVNTQRKATRQLRLLAKLNNNQIVVASREAIALLVKSLRSTDMKIQENAVTRLMNLSINNKNKTAIADAEAIESFIYVLKTGSPKGKENSAATLFSLAVV EENKVGIGRSGAIEPLVDLLGNGTLIGKKIAATALYSLSMYDENKARIVAAHGVDHLVDQLMNPAAGMMNKAVAVLANLATIQEGRNAIVRDGGIPVLVE VVGLGTARGKENAVAALLRLCKDSFRFCNMVIEQGALPPLVALLESGPQRAKEKAQLLLRYLRNPRGRNWLRYIIYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10011516 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	4.8	0.8683
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	8.5	0.8490
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	8.7	0.8582
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	9.2	0.8393
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	10.2	0.8563
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	11.0	0.8277
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	12.6	0.8444
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	15.7	0.8349
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	18.2	0.8051
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	19.4	0.8317

Compare expression of checked genes

Lus10011516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.