Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 181 / 6e-52 Protein kinase superfamily protein (.1) AT3G55550 115 / 1e-27 Concanavalin A-like lectin protein kinase family protein (.1) AT4G05200 110 / 7e-26 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G04540 109 / 2e-25 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT4G04570 107 / 5e-25 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT5G01890 107 / 1e-24 Leucine-rich receptor-like protein kinase family protein (.1) AT3G16030 106 / 2e-24 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G11530 105 / 3e-24 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT1G11340 105 / 5e-24 S-locus lectin protein kinase family protein (.1) AT4G04490 102 / 2e-23 CRK36 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011518 [exp] 451 / 3e-157 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10027054 [exp] 279 / 2e-90 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10038716 [exp] 183 / 2e-52 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10016113 [exp] 158 / 8e-43 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10020083 [exp] 108 / 8e-26 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10041171 [exp] 110 / 1e-25 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10020080 [exp] 110 / 1e-25 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 110 / 2e-25 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 109 / 2e-25 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009600 [exp] 184 / 3e-53 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.008G037501 [exp] 174 / 1e-49 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 166 / 6e-47 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 164 / 7e-46 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.018G111700 [exp] 113 / 1e-26 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.011G028400 [exp] 112 / 2e-26 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G037300 [exp] 112 / 2e-26 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 112 / 2e-26 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 112 / 3e-26 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G024900 [exp] 111 / 4e-26 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011517 pacid=23140381 polypeptide=Lus10011517 locus=Lus10011517.g ID=Lus10011517.BGIv1.0 annot-version=v1.0 ATGGCAACTCATGATCATCATGATCGGGGCGATGATCCGAACAATTCACGGTTCTGGAGGCATACGTTCCCCGTGTACTGTCGAAAATTCTGCCCAGCAT CTCAGACACGATACATTCCAGCCACTCCCAGAGCTTATGCTGTTATCAACTTCTTTGCCAGCGCCACACCATCCAACTCCGATGAGGGCATCAACACCTC CTCCATCTCTTTGCCCTCTTTCTCGGCCAGTAGCTTTTTCTTCTCCATTTCTTCTCCGTCCTCCTCCTCATCTTCCCCGCCCTCTCAGCTCCATCATCTC CGTTCCCACTACCGTTGCACCTTCCGCGGTAGGGAGGCCATCGGCTTCCGCAGGATGTTGCCTCAGGGCGTTATCAGTAGTAGCGCCCCCGAGAAGCTTA AACAGTATCTCTCTGCCATCTCCACCCTCCGTCACGCCAATGTCGTCCAACTCATCGGAGCTTCCGTGTCCGAAATCAAGGAACCGGTGGACCTCATCTA CCAATTCATCCCTGGCCCCACTCTCGCTCACTGTTTGAATCCCAACGGTGACGCATCTGCTGATATTAATTATGATCCATACCAACACGTATTGACATGG AAGTCGAGAATGGAGATCGTACAAGGAGTAGCTAGTGGGTTGGTTTACATCCACCACATGACAGGATTCGATCTCGGGTTTGTCCACAACCGTATCAAGA GCTCCAACATCATCCTTAGCTCTGCTACAAGTGGACAATATTCTCATCTCATCAGAGCCAAGATCTGCAGTTTAGGCCTCTCATGCGCTAGCTGGTCATG TGTTGCCAACGACAACGATGATGACAGCTCAGGTGAGCACCGAAGACCCATGCTAATGGAAGAAGACGATGAAGAAGGGTATCCGTACATGGCACCAGAG CTTTTTCATCAAGGGATAGCAACTCAGAAATCGGATGTGTACGCATTCGGGGTGCTGATGCTGGAGCTGCTCTCAGGTGCGCGTCCTTCCACGTACCTCT ACGAGGACGTAGCTGCCAAGGATGTCGTGTACTCGCGAACATTGATCATAGAGACGGCGAGGGAGATATTCGATCATGATGACTCGGGGGAAGAAATCGA AATAGAGAAGAGGGTGCGGCTTTGGGTGGATAAGAGATTGAATGACTCATTCCCAGTGAAGAGTACCGTAGATTTGTTGCGGGTTGCGCTTATGTGTGTG GTTGAGGATCCTGCATCACGGCCAGACATGGTCTCTGTTCAAAGCTTCATTTTCCAATGTATTTATTCAAAGATTAGACGTTTCTTGACCCATTAG
AA sequence Show only first row Show all	>Lus10011517 pacid=23140381 polypeptide=Lus10011517 locus=Lus10011517.g ID=Lus10011517.BGIv1.0 annot-version=v1.0 MATHDHHDRGDDPNNSRFWRHTFPVYCRKFCPASQTRYIPATPRAYAVINFFASATPSNSDEGINTSSISLPSFSASSFFFSISSPSSSSSSPPSQLHHL RSHYRCTFRGREAIGFRRMLPQGVISSSAPEKLKQYLSAISTLRHANVVQLIGASVSEIKEPVDLIYQFIPGPTLAHCLNPNGDASADINYDPYQHVLTW KSRMEIVQGVASGLVYIHHMTGFDLGFVHNRIKSSNIILSSATSGQYSHLIRAKICSLGLSCASWSCVANDNDDDSSGEHRRPMLMEEDDEEGYPYMAPE LFHQGIATQKSDVYAFGVLMLELLSGARPSTYLYEDVAAKDVVYSRTLIIETAREIFDHDDSGEEIEIEKRVRLWVDKRLNDSFPVKSTVDLLRVALMCV VEDPASRPDMVSVQSFIFQCIYSKIRRFLTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	0	1
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	3.5	0.8809
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	5.3	0.8214
AT1G23850			unknown protein		Lus10030860 [exp]	5.6	0.8893
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	5.7	0.8657
					Lus10042751 [exp]	6.9	0.8712
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	6.9	0.8814
AT2G23200			Protein kinase superfamily pro...		Lus10012646 [exp]	8.8	0.8497
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	10.2	0.8719
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	10.4	0.8619
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	11.8	0.8105

Compare expression of checked genes

Lus10011517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.