Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 172 / 8e-49 Protein kinase superfamily protein (.1) AT4G04490 108 / 3e-25 CRK36 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 (.1) AT3G55550 108 / 3e-25 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04540 108 / 5e-25 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT5G38560 107 / 1e-24 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G04570 105 / 4e-24 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT3G24790 102 / 5e-24 Protein kinase superfamily protein (.1) AT4G28350 104 / 9e-24 Concanavalin A-like lectin protein kinase family protein (.1) AT4G21230 102 / 3e-23 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G31420 102 / 3e-23 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011517 [exp] 441 / 5e-153 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10027054 [exp] 269 / 1e-86 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10038716 [exp] 171 / 7e-48 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10016113 [exp] 152 / 1e-40 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10041171 [exp] 119 / 8e-29 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10021889 [exp] 118 / 1e-28 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 112 / 5e-27 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10006841 [exp] 111 / 5e-26 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 111 / 5e-26 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009600 [exp] 182 / 2e-52 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.008G037501 [exp] 173 / 3e-49 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 167 / 6e-47 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 161 / 7e-45 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 109 / 1e-25 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 109 / 2e-25 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.018G111700 [exp] 108 / 3e-25 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.009G020700 [exp] 105 / 7e-25 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.014G156400 [exp] 106 / 1e-24 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.003G105000 [exp] 106 / 2e-24 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011518 pacid=23140423 polypeptide=Lus10011518 locus=Lus10011518.g ID=Lus10011518.BGIv1.0 annot-version=v1.0 ATGGTGACTCACGAACATGATGATGATGATCAGCCCGAGGATCCGACAAATTCACTGTTCCGAAGCTTTACGTTCCCGCGGTACTATCCAAAATTCCACC CAACATCTCACACGCGGTACATTCCTGCCACTCCGCGGGCTTATGTTGTCATCAACTGCTCTGGAGCCACGCCGTCAAACTCTGACGAGGTGAGCTCCTG CATCTCCTCACCCTCTTTATCGGGGGCGAGTAGCTTCTTCTTCACAATTTCTTCTTCGTCCTCCCCGTCCTCCTCGTCTCCGCCCCATTTCCGCTCACAC TACCGATGCACCTTCCGCGGTAGGGAGGCCATCGGCTTCCGTAGGATGGTACCTCCCGACGTTATTGTTAGTGGCGCCGGGAGGCTTAAACGACATCTTT CTGCCATCTCTGCCCTCCATCACGCTAACGTTGTCCAACTCATCGGAGCTTCTGTGTCCGAGATCAGAGAGTCGTGTACGACCCTGGACCTCGTCTACCA ATTCGTCCCTGGCCTCACCCTATCCCACTGTTTGAATTCTAGCGGCTACATGACCGCCGGTGCTGATACGAACGATCCATACCGATATGTCTCGACATGG AAGTCGAGAATGGAGATCGCTCTAGGAGTGGCTAGCGGATTGGTGTACATCCACCACATGACGGGATTCGATATTGTCTTTGTCCACAACCGTATCAAGA GCTCCAACATCATCCTCACTTCCACTTCAAGCGGAAATTCTCAGCTCATCAGAGCCAAGATCTGTAATTTTGGTTTGTCACGCGATGGCTGGCATGATGT CGACAACAACAACGGTGACGACAATTTAGGTGAGCATCAAAGACTAATGGAAGAGAATGAAGCGGAAGAAGAAGGGTATCCGTACATGGCACCAGAACTT CGTCGAGAAGGGATAGCAACCCAAAAATCGGATGTGTACGCATTTGGGGTGCTGTTGCTGGAGCTGCTCTCTGGTGCACGCCCTGAAGGGGCCCAGAGAG AAGCTCAAGCATCAATAATAGAGACGTCGGCGATGATATTCGGGGGCGAATTACAAGTAGAAGTTGAGGAAATAGAGAAGAGGGTGCGGCTTTGGGTCGA TAAGAGACTGAATGACTCGTTCCCGGTGAAGAGTACGGTCGAGTTGTTGCGCGTTGCGCTCATGTGTGTGGTTGAGGATCCGGAATCACGACCCGACATG GCCTCTGTTGAAGGGTTCCTTTTCCAATGTATAAGAAGTTTTAGGACACAGTCTTTCTCAAGTGGGGGCGGTGTATTAAGTGCTTGGCCTTCATTTCGGA GCAGTAGATGA
AA sequence Show only first row Show all	>Lus10011518 pacid=23140423 polypeptide=Lus10011518 locus=Lus10011518.g ID=Lus10011518.BGIv1.0 annot-version=v1.0 MVTHEHDDDDQPEDPTNSLFRSFTFPRYYPKFHPTSHTRYIPATPRAYVVINCSGATPSNSDEVSSCISSPSLSGASSFFFTISSSSSPSSSSPPHFRSH YRCTFRGREAIGFRRMVPPDVIVSGAGRLKRHLSAISALHHANVVQLIGASVSEIRESCTTLDLVYQFVPGLTLSHCLNSSGYMTAGADTNDPYRYVSTW KSRMEIALGVASGLVYIHHMTGFDIVFVHNRIKSSNIILTSTSSGNSQLIRAKICNFGLSRDGWHDVDNNNGDDNLGEHQRLMEENEAEEEGYPYMAPEL RREGIATQKSDVYAFGVLLLELLSGARPEGAQREAQASIIETSAMIFGGELQVEVEEIEKRVRLWVDKRLNDSFPVKSTVELLRVALMCVVEDPESRPDM ASVEGFLFQCIRSFRTQSFSSGGGVLSAWPSFRSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Lus10035885 [exp]	1.0	0.9192
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	3.2	0.8995
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	4.6	0.8950
AT2G32750			Exostosin family protein (.1)		Lus10007426 [exp]	5.9	0.8329
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	6.2	0.8235
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	6.7	0.8903
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	8.1	0.8892
					Lus10042751 [exp]	11.2	0.8656
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	11.5	0.8690
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	12.0	0.8667

Compare expression of checked genes

Lus10011518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.