Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37440 120 / 3e-30 unknown protein AT3G59670 106 / 6e-25 unknown protein AT3G50040 81 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014864 [exp] 253 / 2e-79 AT4G37440 155 / 2e-42 unknown protein Lus10001409 [exp] 250 / 1e-78 AT4G37440 155 / 2e-42 unknown protein Lus10008349 [exp] 101 / 4e-23 AT3G59670 277 / 1e-86 unknown protein Lus10027104 [exp] 93 / 2e-20 AT3G59670 244 / 1e-75 unknown protein Lus10019305 [exp] 0 / 1 AT4G37440 83 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051100 [exp] 162 / 4e-45 AT3G59670 178 / 4e-50 unknown protein Potri.005G144800 [exp] 158 / 1e-43 AT3G59670 181 / 6e-51 unknown protein Potri.013G127100 [exp] 130 / 5e-33 AT3G59670 377 / 2e-125 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011519 pacid=23140369 polypeptide=Lus10011519 locus=Lus10011519.g ID=Lus10011519.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGGAGAATCAAGTTGTGCCTTCCATAGGTAATTCTGAGGATTTCGAAGTTGACGTAGTTGATTGTTCGCGTTCTATTGAGATTGGACAAG TGGAGGAGGCTAAGAATGACGATACTGATGAGAGCATTAGTTCATTCAGTGGCACATCTGATACCAGGAATGATGAATTCAACTCGGGTGGTGATGAAGA GGTTGAATCGATTGTGGATGATTATGCACCTCCATTGTTTGGTGGCTATCAATCGAGGAGGAAGGGTTTGACAGAGCACTGGAAGAAGTTCATACACCCT GTTATGTGGCGCTGTAAGTGGATAGAATTGAAGCTTAACGAGCTTCGGTCGCAGGCATTGAAGAACGATGGTGATCTTGCAGAAATCGGAAAGGAACTTC ACGAGATGAAAGGTTTCGAAGGGAAGTCGAGACCGTTTTCTTGCTCAATCCCAAGGAATAGAGTCATGAAGAGAAAGAAAAGAAAGAGATATGAAGAGAT GAGTGATGTAGCACCATTCATGCTTCAGCATCACCTGCTTTCGTATCCTGAGATGAAGAAGATAGCAGCCAATAATGGTCATCCCCCTCTTCAAGGTAAG ATTCTCAGAGATGGTGATAATGGGTCAGCATTTTGGTACGGATGGGAGTCTCCAGATTCCAAACGTTTCGATAGCATGGAAGAAGAAATCCTTACAAAGA TCGAAGCTTTGCATTCCAGAGTTTGTACGCTGAGGTCACGAATCGATTTGCTGGTGAGTCAGAACCCCGGAAAGTTCTCTTATGACCATCGGTTGGACGA TCTCATGCCTGCAAATGCAGCTTCTCCGAGTTACGGGGAGGCGGTCCCTCTTCCCGATATGAGCGAAGGCATGGATTGGCCTTTCGATGAGGAATCTCCT TTCGATATCGACCAATATTTCGCAACTCATGATCAGCCAGGAACGCAAGAAATGATGCATGATCTCGAGGGTTTCGATAATCTACTCGAGGAGGAGAACC CCCAATCACCGAACGATAAGCAGGCAGCAGCGATCGTGACACCTTCGAACCAGCAAGCATGGGTGCCATTACTGAAGACGACGAGCTGCCCCGGGAAATC AATCCCGAAATCCCGGGTTCGAGTTACCAGCATGAAGAGAAAGCGCGGGAAGAGAAAGGCTGGAGTTAACGGATGGAAATCAAAGACCATGACGAAGAAG AAAAAGTAA
AA sequence Show only first row Show all	>Lus10011519 pacid=23140369 polypeptide=Lus10011519 locus=Lus10011519.g ID=Lus10011519.BGIv1.0 annot-version=v1.0 MKEKENQVVPSIGNSEDFEVDVVDCSRSIEIGQVEEAKNDDTDESISSFSGTSDTRNDEFNSGGDEEVESIVDDYAPPLFGGYQSRRKGLTEHWKKFIHP VMWRCKWIELKLNELRSQALKNDGDLAEIGKELHEMKGFEGKSRPFSCSIPRNRVMKRKKRKRYEEMSDVAPFMLQHHLLSYPEMKKIAANNGHPPLQGK ILRDGDNGSAFWYGWESPDSKRFDSMEEEILTKIEALHSRVCTLRSRIDLLVSQNPGKFSYDHRLDDLMPANAASPSYGEAVPLPDMSEGMDWPFDEESP FDIDQYFATHDQPGTQEMMHDLEGFDNLLEEENPQSPNDKQAAAIVTPSNQQAWVPLLKTTSCPGKSIPKSRVRVTSMKRKRGKRKAGVNGWKSKTMTKK KK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37440			unknown protein		Lus10011519 [exp]	0	1
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	46.9	0.5238
AT1G51410			NAD(P)-binding Rossmann-fold s...		Lus10009955 [exp]	67.6	0.4873
AT2G37500			arginine biosynthesis protein ...		Lus10023756 [exp]	71.9	0.5070
AT1G21550			Calcium-binding EF-hand family...		Lus10029730 [exp]	81.2	0.4928
					Lus10002965 [exp]	107.8	0.4806
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10010002 [exp]	110.1	0.4706
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	177.7	0.4590

Compare expression of checked genes

Lus10011519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.