Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011520 pacid=23140379 polypeptide=Lus10011520 locus=Lus10011520.g ID=Lus10011520.BGIv1.0 annot-version=v1.0 ATGGAGCGCAAAAGCATGCTTCTTCTCGCATTGGTGGCCTTAATCGTCGCCGGAGTCGGCGGACAAGCTCCCGCCGCCACTCCCACCTCCACTCCCACCG TCCCCGCCGCCGCACCATCCACCAACACTTCATCTCCAGCCACCACCGCATCTCCACCAACAGCCGCAGCCCCGACCTCCACTCCACCAGCAGCAGCTCC CGTCGCTACTCCACCTGCCGCCGCCGTCACTCCAGTAAGCTCCCCCCCTACAGCTGCTGCTCCAGTCAGCTCCCCACCAACAGCAGCATCTGCTCCTCCT TCCCCAGCTCCCGTCGCCGCTTCCGCTCCTCCTTCCCCTGCTCCCGTCGCCGCCGCTACTCCTCCAGCAGCAGCGTCTCCTCCAGCCGCTGAAGTTCCCG CTCCATCTCCTAGTAAGTCCAAGAAGAAGAAGGGTGAATCTCCTGCTCCTTCTCCTTCCACTTCCAGCCCTCCCGAGCCTTCTGCTGAAGCTCCCGGACC TAACTCTGCTGACGCTCCTGGTCCTTCCTCCCCCACCGTCGCCGATGAGAGTGGAGCGATGAGCTTGATGAATGTGGAGAAGATCGGATTGGCTTTCGGA TCGGCTCTTCTTCTAGCTATGGCGTTCTAG
AA sequence Show only first row Show all	>Lus10011520 pacid=23140379 polypeptide=Lus10011520 locus=Lus10011520.g ID=Lus10011520.BGIv1.0 annot-version=v1.0 MERKSMLLLALVALIVAGVGGQAPAATPTSTPTVPAAAPSTNTSSPATTASPPTAAAPTSTPPAAAPVATPPAAAVTPVSSPPTAAAPVSSPPTAASAPP SPAPVAASAPPSPAPVAAATPPAAASPPAAEVPAPSPSKSKKKKGESPAPSPSTSSPPEPSAEAPGPNSADAPGPSSPTVADESGAMSLMNVEKIGLAFG SALLLAMAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	1.4	0.8719
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10005231 [exp]	2.4	0.8526
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	3.5	0.8635
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	3.5	0.8381
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004659 [exp]	5.1	0.7757
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	6.5	0.8278
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	7.5	0.8268
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	7.7	0.8487
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	8.9	0.8425
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	11.5	0.7836

Compare expression of checked genes

Lus10011520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.