Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 448 / 6e-158 Protein phosphatase 2C family protein (.1) AT5G66080 362 / 4e-124 Protein phosphatase 2C family protein (.1) AT3G51370 355 / 3e-121 Protein phosphatase 2C family protein (.1.2) AT3G55050 348 / 1e-118 Protein phosphatase 2C family protein (.1.2) AT5G06750 348 / 3e-118 Protein phosphatase 2C family protein (.1.2.3) AT3G12620 344 / 7e-117 Protein phosphatase 2C family protein (.1.2) AT4G38520 337 / 7e-114 Protein phosphatase 2C family protein (.1.2) AT3G17090 333 / 1e-112 Protein phosphatase 2C family protein (.1.2) AT5G02760 327 / 2e-110 Protein phosphatase 2C family protein (.1) AT3G16560 124 / 1e-31 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019302 [exp] 682 / 0 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10013896 [exp] 466 / 3e-165 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10002110 [exp] 444 / 7e-156 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030302 [exp] 360 / 6e-123 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 355 / 8e-121 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 354 / 1e-120 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 352 / 7e-120 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 350 / 3e-119 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 347 / 6e-118 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297200 [exp] 500 / 2e-178 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 483 / 2e-171 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 464 / 2e-164 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.016G045600 [exp] 377 / 9e-130 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.006G192600 [exp] 361 / 1e-123 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.010G214700 [exp] 351 / 2e-119 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 348 / 3e-118 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 348 / 3e-118 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 347 / 5e-118 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 342 / 4e-116 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10011521 pacid=23140426 polypeptide=Lus10011521 locus=Lus10011521.g ID=Lus10011521.BGIv1.0 annot-version=v1.0 ATGTTGCTGGACTGCAGTTGCTTCGGCGGCCACGGAGGCGGCGGAGCAACCGGCGACGAGCTTCTCTGGCATGTAGGCCTAAAGCGACACGCTTCAGGTG ATTTCTCCTTTGCAATGGTTCAAGCGAATTCCTCGCTGGAAGACCAAGGTCAGGTTTTCACTTCCCCTTCCGCTACTTACATCGGCGTCTACGACGGCCA CGGAGGCCCTGAAGCTGCCCGCTTCCTCTCCACCCGTCTCTTCCCCTACATCCACGATTTTGCGACGGAGCAAGGCGGACTATCGGCGGAGGTAATAAGG AAGGCGTTCTCGGCAACGGAGGAGGAGTTCCTGCAGATGGTGAAGCGATCGTGGATGAACCAGCCGCAGATTGCGTCCGTCGGATCTTGTTGTCTTTTAG GGATAGTGTCTGACGATTTGCTGTACGTTGCTAATCTTGGCGATTCGAGAGCGGTGATGGGGAAGAGAGCTTCTCCGGCGACTGCTGCGGCGGAGCGATT GACTGTCGATCATAATGTTGCCGTTGAGGAGGTTAGAAACGAAGTTCTGGCTCTTCATCCCGATGATTCCCACATCGTTCTTTATACCCGTGGTGTTTGG CGGATTAAGGGCATAATCCAGGTTTCGAGATCGATAGGGGATGTGTATCTAAAGAAGCCCGAAATGAGCAGAGATCCACTCTTCCAACAATTCGGCACAC CAGTTCCTTTAAAAAGAGCAGTAATGTCAGCAGAGCCATCGATAACAATCCGAAAGCTGAACCCAGACGACATGTTCTTGATACTCGCAACAGACGGTCT ATGGGAGCAGCTAACCGACGAAGCAGCTGTCGATATGGTGTTGAAGAATCCAAGAGCCGGGATAGCAAGGAGGCTGGTGAAGGCAGCACTACAGGTGGCT GCGAAGAAAAGGGAGATGATCTACAACGACATAACGAAGATAGAAAGAGGGGTGAGACGGTATTTCCACGATGACATCACTGTAATCGTGATGTATCTCG ATCATGGCGCGGCAGGAAGAGGGAAATCAAGCACGGTGGATTGCGTAAGTTCTCCTGCCGATATCTACTCTTCTTCTAATGCAAGCAGCAAAGTGCATGT TTAA
AA sequence Show only first row Show all	>Lus10011521 pacid=23140426 polypeptide=Lus10011521 locus=Lus10011521.g ID=Lus10011521.BGIv1.0 annot-version=v1.0 MLLDCSCFGGHGGGGATGDELLWHVGLKRHASGDFSFAMVQANSSLEDQGQVFTSPSATYIGVYDGHGGPEAARFLSTRLFPYIHDFATEQGGLSAEVIR KAFSATEEEFLQMVKRSWMNQPQIASVGSCCLLGIVSDDLLYVANLGDSRAVMGKRASPATAAAERLTVDHNVAVEEVRNEVLALHPDDSHIVLYTRGVW RIKGIIQVSRSIGDVYLKKPEMSRDPLFQQFGTPVPLKRAVMSAEPSITIRKLNPDDMFLILATDGLWEQLTDEAAVDMVLKNPRAGIARRLVKAALQVA AKKREMIYNDITKIERGVRRYFHDDITVIVMYLDHGAAGRGKSSTVDCVSSPADIYSSSNASSKVHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	0	1
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	3.6	0.8637
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	7.1	0.8039
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	8.9	0.8440
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	10.1	0.8620
AT5G01850			Protein kinase superfamily pro...		Lus10025154 [exp]	10.5	0.7888
AT5G64667		IDL2	inflorescence deficient in abs...		Lus10005811 [exp]	11.0	0.8133
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	13.5	0.8583
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	14.6	0.8454
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	16.4	0.8216
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	19.0	0.7892

Compare expression of checked genes

Lus10011521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.