Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67480 439 / 2e-154 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 384 / 2e-132 BT5 BTB and TAZ domain protein 5 (.1) AT1G05690 317 / 3e-106 BT3 BTB and TAZ domain protein 3 (.1) AT5G63160 219 / 5e-68 BT1 BTB and TAZ domain protein 1 (.1) AT3G48360 215 / 1e-66 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT1G79000 79 / 1e-15 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 69 / 2e-12 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 60 / 2e-09 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT1G55970 54 / 1e-07 HAG4, HAG04, HAC6, HAC04, HAC4 ,ATHPCAT2 HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, histone acetyltransferase of the CBP family 4 (.1) AT1G01640 47 / 5e-06 BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019299 [exp] 674 / 0 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 458 / 2e-161 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10042082 [exp] 230 / 2e-72 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10018087 [exp] 224 / 4e-70 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 217 / 2e-67 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 120 / 4e-32 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10034780 [exp] 79 / 1e-15 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 78 / 3e-15 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 77 / 1e-14 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G055100 [exp] 448 / 5e-157 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.017G009700 [exp] 372 / 5e-127 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G140400 [exp] 369 / 5e-126 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.015G087700 [exp] 247 / 5e-79 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 236 / 9e-75 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.014G000500 [exp] 78 / 3e-15 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 77 / 6e-15 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.004G104201 [exp] 58 / 7e-09 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10011523 pacid=23140435 polypeptide=Lus10011523 locus=Lus10011523.g ID=Lus10011523.BGIv1.0 annot-version=v1.0 ATGGGTGAAACGGCAGATTGGATCGCCGGTGGCGGCGAGAAAACCCCATCCACGGCGGGAAAAACCTGTCCTGATCCACCTCCAATCTCCAGCTACCGTC CGAGAACAACCTCTCCGGCGGTGGCGGCGGAGGCGAGCAATATTTTATCCGTTTCTAGAGCAACGAGGGATGTATGGGAGCGGTTGTTCAACGAAGGTTA TAGATCGGACGTTGAGATCCATGCTAGTAATGGCGATCCAATCTTCGCTCACGCCTCTGTTCTCGGCATGGCTTCTTCGGTGCTGAGAGGGATGTTGAAG CAGGCCAAAAGCCGTAGCGATGGCCGGCGTTCGATCTCCGTCAACGGCGTGCCACACGACGCCGTTCAAGTCTTCATCAGATTCCTGTACTCATCCTGTT ACGAGAAGGAAGAGATGGAGGTATTCGTGCTACATCTACTAGTCCTATCCCACGTATTCGTGGTGCCGGAGCTGAAACGAATCTGCATCGAACGAGTCGA GCACGGATATCTAACGGCGGAGAATGTGGTCGACATTTTACAGTTGGCATTGCTATGCGACGCCCCGAGGCTGAGCTTGATCTGCCATCGAATGATCATC AAGGAGTTCAAGGAAATCTCGTGTACAGTGGGATGGCAAGCCATGAGGGAGAGCCATCCCGTACTCGAGAAGGAACTCCTCGAGTCCATCGTTGAAGCCG ACAATAGGGAGAAAGAAAGAATTAGAAGGAGCAAAGAGAGGAAGATATACTTGCAACTATACGAGGCAATGGAGGCACTAGTCCACATATGCAGAGACGG TTGTCGAACGATCGGACCACACGACAAGGAATTCGAGCAGAACCAAGAGCCATGCAACTACGGTGCTTGCCGCGGTCTGGAGCAATTGGTCCGACATTTT CGAGGGTGTAAGCAAAGAGTGCCCGGCGGATGCAGCCATTGCAAGAGGATGTGGCAGTTGCTTGAGCTCCACTCGCGACTTTGTGCCGATTCGAGTCTCT GTCGGGTTCCTCTATGCAGGAATTTCAAGGAGAGGACTAGGAAGCAGAGCAAGAAGGAGGAGACTAGGTGGAGAATGCTGGTGAAGAACATACTTAGAGC CAAACTTGTTGGTGGGTCACCGTTCTTCATGTCATTGCTGGTTTCGTCCTCAGTTTCGGTATAG
AA sequence Show only first row Show all	>Lus10011523 pacid=23140435 polypeptide=Lus10011523 locus=Lus10011523.g ID=Lus10011523.BGIv1.0 annot-version=v1.0 MGETADWIAGGGEKTPSTAGKTCPDPPPISSYRPRTTSPAVAAEASNILSVSRATRDVWERLFNEGYRSDVEIHASNGDPIFAHASVLGMASSVLRGMLK QAKSRSDGRRSISVNGVPHDAVQVFIRFLYSSCYEKEEMEVFVLHLLVLSHVFVVPELKRICIERVEHGYLTAENVVDILQLALLCDAPRLSLICHRMII KEFKEISCTVGWQAMRESHPVLEKELLESIVEADNREKERIRRSKERKIYLQLYEAMEALVHICRDGCRTIGPHDKEFEQNQEPCNYGACRGLEQLVRHF RGCKQRVPGGCSHCKRMWQLLELHSRLCADSSLCRVPLCRNFKERTRKQSKKEETRWRMLVKNILRAKLVGGSPFFMSLLVSSSVSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	1.0	0.9108
AT4G30780			unknown protein		Lus10035819 [exp]	2.4	0.8778
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	4.7	0.8205
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	7.2	0.8514
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	8.8	0.8112
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	10.0	0.8230
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	10.0	0.8333
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	10.5	0.7863
AT1G80450			VQ motif-containing protein (....		Lus10020092 [exp]	13.0	0.7125
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	14.0	0.8089

Compare expression of checked genes

Lus10011523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.