Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 613 / 0 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 528 / 2e-171 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 461 / 8e-148 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 401 / 5e-125 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 380 / 4e-117 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 353 / 2e-108 AFH3 formin 3 (.1.2) AT5G48360 317 / 2e-94 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 301 / 6e-89 ATFH8 formin 8 (.1) AT1G59910 276 / 8e-79 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 253 / 3e-71 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019298 [exp] 1337 / 0 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 786 / 0 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 505 / 4e-162 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 501 / 1e-160 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 410 / 6e-129 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 395 / 8e-124 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 394 / 3e-123 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 393 / 1e-122 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 388 / 8e-120 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 851 / 0 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 525 / 2e-171 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 512 / 2e-166 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 514 / 2e-165 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 514 / 2e-165 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 422 / 3e-132 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 414 / 4e-129 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 387 / 5e-119 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 380 / 3e-116 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 372 / 2e-114 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10011524 pacid=23140421 polypeptide=Lus10011524 locus=Lus10011524.g ID=Lus10011524.BGIv1.0 annot-version=v1.0 ATGAAGAACTCTCATCGTTGTTCTAGCTGCTACTGGTACTGCTTCCTCCTCCTTTTAATTTGTTCTTTTCCGCACAATTCCGATTCACAACCGAGTGTCG GTGCCGGAATCAGCCGGAGGATTCTCCACCAGCCATTGTTCCCGGCGACTTCTTCACCACCGCCGTCGGGATCGCCGCCGCCTCCGGCGGCGGATACAAC ATCCTCTTTCCCGTTCTTCCCCGAGGTACCTGCGCAGCCTTCTTCTACTCCTCCAGATCAGCAGCGGCAGGAGCCTCCGATTACGAGCTCGGACGTCAAT GGAACTCTCCCGATCCCGACGGCGACGACCGCTCAGCCGGCGAAGCCGGTTAAGAGGGCGGCGATTGCTGTCTCCGTCGCGCTCGTGACTCTTGGGATGC TCTCCGGGCTTGCGTTCTTCATCTGCCGTCACCGCGCCAAGCACTCGACGAGGAGGGAGTCGGAGAAGTTCGTTGCGGAAGAGGATCAGTCGCGGCGATT TGACGATGATGAGTTAGTTAGGAATCCGAGGAATCCTCTTCGTGCCCCTCCGCCGCTGCAGCAGCAGCAGCAGACGTCCAATTTTTTGTACATGGGGACG GTTGAGTCGAGTCGGAGTTTGAGCTCTGAGATGAACAGAACAACGACGGCGGCGGCTGCTGTTTCGACTAAGGCTACTCCGATGAAGAGATCTGATCGGT ATAGGCCGAGTCCTGAGCTGCATCCCTTACCGCCATTGCCGAAACCTCCAGTCGCTACTGTCACTCCTTTTGATAAGTATCATCCTCACCATAATCCGCG TCTTTCACGGCCTATCCCGACTACTGCTCTGGTTTCGCGGCCGGAATTGGAGACCTCTGAATCGCAGACTTCGTCCTCGTCGGGAGATGAAGAGAGTAAC GGTACGGCGTTTTACACGCCGGCGGGATCTGCCATGAGTAACGACGACGGATTCTATGCTCCGATTTCCGGTTCACGGCATCGTCACAGTAAAAGTAACG GCAGTGGCAGGTCATCGAATTTGAAGTCAGGTAACGGCGGTAACGGTTCTTCCTCTGTTCCTCATTCGAAAAGAACTTCTCCGAAATCGAGATTTACTTC TTCCGTTTCTTCTCCGGAGATGAAACATGTAATCATTCCCTCGATTAAGAAGCCACCGTCCGAAGACAATCCTCCATCGCCTCCGCTGCGAGATGATGAT GATTTTCAGGTAGCGAGCTCGCATCAATCCAATCGGCCGAAATTCGCGGCTCCTCCTCCTCCACCGAATATGGCAATTCTCCGGTCGCTGAACGACAATC CACCGTGCCAAACCACTGTTCCTCCTCCACCACCGCCTCCTCCGCCTCCACCTCCTCCTGCGCCGTCGAGTTCAATTCCAACGCCAAGGAAGGTAGGTAG ATCTCTATTGCCAGAGAGAACACGTAGTTCTTCCACGACGTGGACACCGAGTTCAACGGGGAGCTCCAAAACCAATGCTGCCAAATCGGCTGAGAAGAGT ACCGGAAGCGGCGGATTAATGTCGTCTGGAAAGATAGATGCAGACGACGAGAATGAAGGGACGAAGCCGAAGCTGAAAGCTCTCCATTGGGACAAAGTTC GGGCAACTTCTGACCGTGCTACTGTGTGGGATCAGCTCAAATCCAGTTCATTCCAATTAAACGAGGACATGATGGAGAGCCTATTTGGATGCAATTCAGC CAACACTGCTCAGAAAGAACAGCAGCAAAATGCACCCAGGAAATCAGTTCTGCCAGCTCCAGTTGAAAAGGAGATTAGAGTTTTGGATCCAAAGAAGTCA CAGAACATAGCCATACTGTTGAGAGCATTGAATGTCACCAAAGATGAAGTCTCTGAAGCTCTTCTTCATGGGAATCCAGAAGGATTAGGAGCTGACCTGT TGGAAACTTTGGTGAAGATGGCTCCAACAAAAGAGGAAGAAATCAAGCTTCGAGACTACAATGGCGATATCTCCAAACTAGGCTCTGCAGAAAGATTCCT CAAGGCTATTCTCGACATCCCATTCGCATTCAAGAGAGTTGAAGCCATGTTATACAGAGCCAACTTCGAAACCGAAGTCTCTTACCTTAAACGATCTTTC CAAACTCTAGAGGTGGCAAGTGAAGAACTCAAGAACAGCAGGCTATTCTTCAAGCTCCTGGAAGCTGTTCTAAAGACAGGAAACCGAATGAACGTCGGCA CGAATCGAGGAGATGCCAAGTCATTCAAGCTCGACACGCTGCTGAAACTCGTGGACATCAAAGGAACCGATGGGAAAACGACATTGCTTCACTTTGTAGT TCAGGAAATGATCAGATCGGAAGGCGGTGCTCACTCGGAACTAGTTCATGACAACAAACTAGCACCAACAACAATGAAAGACGAAGAATTTCGGAAGCAA GGGTTGGTGGTTGTATCCTCTCTAGGCAGAGAACTCATCAACGTGAAAAAGGCAGCAGGGATGGACTCAGACGTACTAAGCAGCTACGTAGCCAAGCTCC AAACCGGACTCGAAAAAGTTCGGTCAGTTCTGCAGTATCAGAAACCCGACACTATACCGAACTTCTTCCACTCGATGAAGCTGTTCCTGGGAGACGCAGA AGACGAGATCGAGACCATCAAGGTGGCTGAAAGTCGAGCATTAGCGTTGGTGAAAGAGGTGACAGAGTATTTCCACGGTGATACGGCGAAAGAGGAAGCT CACCCTTTGAGGATCTTCATGGTTGTGAGGGACTTTCTGTCTATACTTGATCATGTGTGTAAGGAAGTTGGACAGATGCAGGATCGGACACTTGTGGGAT CTGCTCGTTCTTTCAGGATCGCTCCGAGCGCTTCGCTGCCCGTGTTGAATCGGTACAATGTGAGGCAAGATCGTTCGAGTTCTGATGACGAGAATTCGTC CTCGCCTTGA
AA sequence Show only first row Show all	>Lus10011524 pacid=23140421 polypeptide=Lus10011524 locus=Lus10011524.g ID=Lus10011524.BGIv1.0 annot-version=v1.0 MKNSHRCSSCYWYCFLLLLICSFPHNSDSQPSVGAGISRRILHQPLFPATSSPPPSGSPPPPAADTTSSFPFFPEVPAQPSSTPPDQQRQEPPITSSDVN GTLPIPTATTAQPAKPVKRAAIAVSVALVTLGMLSGLAFFICRHRAKHSTRRESEKFVAEEDQSRRFDDDELVRNPRNPLRAPPPLQQQQQTSNFLYMGT VESSRSLSSEMNRTTTAAAAVSTKATPMKRSDRYRPSPELHPLPPLPKPPVATVTPFDKYHPHHNPRLSRPIPTTALVSRPELETSESQTSSSSGDEESN GTAFYTPAGSAMSNDDGFYAPISGSRHRHSKSNGSGRSSNLKSGNGGNGSSSVPHSKRTSPKSRFTSSVSSPEMKHVIIPSIKKPPSEDNPPSPPLRDDD DFQVASSHQSNRPKFAAPPPPPNMAILRSLNDNPPCQTTVPPPPPPPPPPPPPAPSSSIPTPRKVGRSLLPERTRSSSTTWTPSSTGSSKTNAAKSAEKS TGSGGLMSSGKIDADDENEGTKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSANTAQKEQQQNAPRKSVLPAPVEKEIRVLDPKKS QNIAILLRALNVTKDEVSEALLHGNPEGLGADLLETLVKMAPTKEEEIKLRDYNGDISKLGSAERFLKAILDIPFAFKRVEAMLYRANFETEVSYLKRSF QTLEVASEELKNSRLFFKLLEAVLKTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEMIRSEGGAHSELVHDNKLAPTTMKDEEFRKQ GLVVVSSLGRELINVKKAAGMDSDVLSSYVAKLQTGLEKVRSVLQYQKPDTIPNFFHSMKLFLGDAEDEIETIKVAESRALALVKEVTEYFHGDTAKEEA HPLRIFMVVRDFLSILDHVCKEVGQMQDRTLVGSARSFRIAPSASLPVLNRYNVRQDRSSSDDENSSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	1.0	0.9316
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10021717 [exp]	2.8	0.8667
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	3.2	0.8808
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	6.0	0.8432
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	9.5	0.8457
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	9.5	0.8670
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	10.7	0.8637
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	12.0	0.8020
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	12.5	0.8619
AT1G61900			unknown protein		Lus10020048 [exp]	13.4	0.8321

Compare expression of checked genes

Lus10011524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.