Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37590 568 / 0 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 559 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G14820 520 / 5e-179 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT2G23050 497 / 2e-172 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 485 / 4e-166 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 393 / 1e-129 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 350 / 2e-113 Phototropic-responsive NPH3 family protein (.1) AT5G47800 342 / 6e-111 Phototropic-responsive NPH3 family protein (.1) AT5G03250 342 / 2e-110 Phototropic-responsive NPH3 family protein (.1) AT5G13600 322 / 1e-102 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019297 [exp] 1023 / 0 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 536 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 535 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 493 / 1e-168 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 458 / 3e-150 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 397 / 5e-131 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 366 / 3e-119 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 348 / 5e-112 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 347 / 7e-112 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146400 [exp] 654 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 581 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 567 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 527 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 508 / 1e-174 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.010G046800 [exp] 412 / 5e-137 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 410 / 4e-136 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G112600 [exp] 376 / 2e-122 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 376 / 2e-122 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G003700 [exp] 372 / 7e-122 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10011525 pacid=23140424 polypeptide=Lus10011525 locus=Lus10011525.g ID=Lus10011525.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTTGGATCTAAGCCTGATTGCTTCCAGACTCAAGGGGATAATATCAGGTATGTAGCTACAGAATTGGCATCTGACATAGTAGTAA ACGTTGGGGATGTCAAATTCTACCTCCACAAGTTTCCACTATTATCCAAGAGCTCCATGATGCAGAAGCTAGTCTCGAACTCAAACTCAAACTCAGATGA CGGCGAAATCAACATCCACGACTTTCCAGGCGGACCGGTAGTGTTCGAGATATGTGCAAAGTTCTGCTACGGCATGGCAGTCACCTTAAATCCGTACAAT GTAGTGGCAGCTCGGTGTGCATCTGAGTATCTCGGGATGTACGAGACGGTAGAGAAAGGAAACTTGGTCTACAAGATCGAGGTCTTTCTCAATTCGAGCA TTTTCAGGAGCTGGAAAGACTCGATCATTGTCCTCCAAACTACGAGGTCGTTCTTGCCATGGTCCGAGGAGTTGAATCTAGTCAACCGGTGCCTCGATTC CATCGCTTCGAAGGCCTGCATCGACACCTCGATGGTGACTTGGTCATATACCTATAACAGCAATAGGGATCAAAGGAAACTACAAATTAGTAGTGAGGTT CCGAAAGATTGGTGGGTGGAAGATCTATGCGAGCTTCAGATTGAATCATACCAAAGGGTAATCACCAGAGTTAAGGCGAAAGGTGAAGCCTTTAATGACG TAATCGGAGAATCCTTACATGCTTATGCTCTGAGAAAACTGCCTGATGTCGAGGATGTTTCGAAATATCGGTCCTTGGGGGAAACCATAATGTGTTTACT TCCTCCACAGGAGAAATGCAGTTTTCCTTGTAGCGCAAGCTTCATGCTGAAGCTACTAAGGACTGCAATTATGCTAAAGTGTGAAGAAGCGGATAGGAAC GAACTGATACGAAGAATCGGTGGACAGCTCGTGGAGGCGACTATCGAGGATCTTTTGATTCCGACTATGTTCGATGTCGATGTAGTGCATAGACTCGTTG AGGAATTCGGGAAACATCAACAGAAGGAGCATGAGATTGTGCCTTATGATGAGGACTTGAAGTTTGGTTCAGATGGCTCAAGGGCTCATGTAGCAAAGTT GGTTGATGGTTACCTTACTGAATTAGCTAAAGATTCTGACTTGCAGAATCTCTCGAAGTTCCTGAGCTTAGCCGAAATGGTTTCGAGCTTCCCTAGATCG TCTCATGATGGATTATACCGAATCATTGATATGTACCTTAAGGAACACCCAACCATCGGAAAGAGCGAAAAGAAGAGGCTATGCAAGCTGATGGACTGCA AGAAGCTATCGTCGGAAGCAAGCACGCACGCCGTTCAAAACGAGAGGCTTCCACTGCGTGTCGTGGTGCAAGTCCTCTTCTTTGAGCAGATGAGGCAGTC AGCTTCTTCATCGCCTGCTGGAAGTAGTACGCCGTTTTCAGGCTCGATCACGACATTAGTCCCCGGAGAGTCCCATGGAAGCTCGAGGTCCACCGAGGAG GAAGAATGGGATGATTCTGTGCCTACAACAGCGGAAGAAGACATAGGTCGTGACCGTAAGTCTCTCGTTACTAGTAAAACCAAAGGGCTGGCCATGTCAA GGATGTTCTCGAAGCTCTGGTCGAGTAAAGATCGGATTGATGAGATTAGCAGCTCTGAGACGTCAGGGAGTACTCCGGGATCGAAGTTCGTGGATGAAGC TAAATCTATGAGGTCGTCGAGGAGCAGGAGGAAGTAA
AA sequence Show only first row Show all	>Lus10011525 pacid=23140424 polypeptide=Lus10011525 locus=Lus10011525.g ID=Lus10011525.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDCFQTQGDNIRYVATELASDIVVNVGDVKFYLHKFPLLSKSSMMQKLVSNSNSNSDDGEINIHDFPGGPVVFEICAKFCYGMAVTLNPYN VVAARCASEYLGMYETVEKGNLVYKIEVFLNSSIFRSWKDSIIVLQTTRSFLPWSEELNLVNRCLDSIASKACIDTSMVTWSYTYNSNRDQRKLQISSEV PKDWWVEDLCELQIESYQRVITRVKAKGEAFNDVIGESLHAYALRKLPDVEDVSKYRSLGETIMCLLPPQEKCSFPCSASFMLKLLRTAIMLKCEEADRN ELIRRIGGQLVEATIEDLLIPTMFDVDVVHRLVEEFGKHQQKEHEIVPYDEDLKFGSDGSRAHVAKLVDGYLTELAKDSDLQNLSKFLSLAEMVSSFPRS SHDGLYRIIDMYLKEHPTIGKSEKKRLCKLMDCKKLSSEASTHAVQNERLPLRVVVQVLFFEQMRQSASSSPAGSSTPFSGSITTLVPGESHGSSRSTEE EEWDDSVPTTAEEDIGRDRKSLVTSKTKGLAMSRMFSKLWSSKDRIDEISSSETSGSTPGSKFVDEAKSMRSSRSRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	0	1
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	4.0	0.7715
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	7.2	0.7220
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	8.3	0.7204
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	18.0	0.7189
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	19.7	0.7158
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	22.4	0.7100
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	27.9	0.7126
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	29.7	0.6897
AT3G62650			unknown protein		Lus10010026 [exp]	37.1	0.6787
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	37.4	0.6830

Compare expression of checked genes

Lus10011525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.