Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019295 [exp] 597 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053900 [exp] 499 / 5e-180 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10343 [flax] [poplar] Q_salvage Potential Queuosine, Q, salvage protein family
Representative CDS sequence Show only first row Show all	>Lus10011527 pacid=23140415 polypeptide=Lus10011527 locus=Lus10011527.g ID=Lus10011527.BGIv1.0 annot-version=v1.0 ATGGCGTTGGCTGGCAGCATGGCAATGGACGAGGTTAGGGCGAGCGCCGCCTGGGTTGCTGCTCGGTCGACCCACGTCACCGTTAACCCTGAAGCGATTG AGAAGGTAGTGGATAGCATTCATGACAAAATCCCGAAGATAGAATGGGATTTCGAAGGGATTCACTATTTCGACGGCGGCCCTCTCACCGTCCAGTACCT CTTTGTTCTCGACACCCTCAATTTCTGCTTCTGGCCTGATGTTGAATTGAACTATGATGATCTGGCTTCTGGATTAAAGGCAGCTCTAGAGCAGGACAAA TCCGTATTTGATGCGGATAGACTGCAAAAGTACACTGGTCCCGACTTGCGCAAATTGCTGAACTGGCCGCGACCACTTCCCTTGGAGGATGAACGTGTTC GTTTGCTGCATGAGGTTGGTTTCGAGCTGAAGCGAAGTTTTGGTGGCAATGCTTCGAATCTTGTGATGTCTTGCAAGAAGTCGGCTTCAAAGCTTGTTGC AACCATCACCAGTCACTTCCCTGGCTTCAGAGACCATTCAGTGTACAAAGGCCACCAAGTGTTCTTCTACAAAAGAGCTCAGATCTTCGCAGCTGATCTC TACGGTGCATTCAAGGGGCAAGGATATGGAGACTTCCACGACATTACCTCGATAACTATTTTCGCTGACTACATCGTTCCTGCTGTTCTCCGGGAGCTCG GTGTGCTGACATACCATTCTGACCTGGCCAATGTGGTCGACGCGCACAGCGAGATCACAGCTGGCAGCCAGGAGGAAGTCGAGTTACGAGCCTGCTCCAT ATATGCCGTGGAGAAGATGAGAGACTTGGTTCATCAGAAATCTGGAAACCCGGTTCTGAGTGTGGAGTTGGATCTTTGGCTGTGGGCTTATGGTGTTCAA CAACCTTCTCTGCAATACCACAGAACTCTCTCTATATACTATTGA
AA sequence Show only first row Show all	>Lus10011527 pacid=23140415 polypeptide=Lus10011527 locus=Lus10011527.g ID=Lus10011527.BGIv1.0 annot-version=v1.0 MALAGSMAMDEVRASAAWVAARSTHVTVNPEAIEKVVDSIHDKIPKIEWDFEGIHYFDGGPLTVQYLFVLDTLNFCFWPDVELNYDDLASGLKAALEQDK SVFDADRLQKYTGPDLRKLLNWPRPLPLEDERVRLLHEVGFELKRSFGGNASNLVMSCKKSASKLVATITSHFPGFRDHSVYKGHQVFFYKRAQIFAADL YGAFKGQGYGDFHDITSITIFADYIVPAVLRELGVLTYHSDLANVVDAHSEITAGSQEEVELRACSIYAVEKMRDLVHQKSGNPVLSVELDLWLWAYGVQ QPSLQYHRTLSIYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011527 [exp]	0	1
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	7.6	0.8944
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	8.1	0.9033
AT2G32760			unknown protein		Lus10016662 [exp]	17.1	0.8855
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	21.8	0.8819
					Lus10029790 [exp]	25.0	0.8482
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	27.4	0.8770
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	27.9	0.8687
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	29.5	0.8769
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	30.4	0.8421
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	34.2	0.8682

Compare expression of checked genes

Lus10011527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.