Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37560 87 / 2e-20 Acetamidase/Formamidase family protein (.1) AT4G37550 75 / 4e-16 Acetamidase/Formamidase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019293 [exp] 146 / 4e-46 AT4G37560 92 / 3e-23 Acetamidase/Formamidase family protein (.1) Lus10019294 [exp] 107 / 1e-30 AT4G37560 77 / 3e-18 Acetamidase/Formamidase family protein (.1) Lus10011528 [exp] 81 / 3e-18 AT4G37560 797 / 0.0 Acetamidase/Formamidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145400 [exp] 91 / 1e-21 AT4G37560 797 / 0.0 Acetamidase/Formamidase family protein (.1) Potri.007G053750 [exp] 0 / 1 AT4G37560 0 / 1 Acetamidase/Formamidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03069 [flax] [poplar] FmdA_AmdA Acetamidase/Formamidase family
Representative CDS sequence Show only first row Show all	>Lus10011529 pacid=23140375 polypeptide=Lus10011529 locus=Lus10011529.g ID=Lus10011529.BGIv1.0 annot-version=v1.0 ATGGCTCAAAGGAAGCAATACGGTGCAAGAGTTGTGTTCCCCGTTGACTTGAAGAAGAAGCCATGTCAGCAGGATCTTCCACTCCACAACAGGTGGCACC CGGACATCCCTCCGGTGGCCGAAGTCGCCGCCGGTGAGCTTTTTCGGGTGGAGATGTTTGATGCCAACGGCGGCCACATCACCCCGGAGTTCACTGCCGA GGACGTCAAGTACGCCGACCTTTCTGTCCAATACGGTGCAAGAGTTGTGTTCCCCATCGACTTGAAGAAGAAGCCATGGGACCAGGAGCTTCCCCTCCAC AACCGGTGGCACCCGGACATCCCTCCGGTGGCCGAAGTAGTCACCGGAGAGGTTTTCCGGGTAGAGATGATGGAGGCCCACGGTGGCCGCATCACTCCGG AGTTCACCGCCGACGACATCAAGTCCGCCGACCTTTCTGTCGTGAGCTCTTTCTTTCTTCTTCTTTTGGCTCTTATGAAACTTATTCTCTCTGTTTTGTC TTTTGCCCTACCAAGATGA
AA sequence Show only first row Show all	>Lus10011529 pacid=23140375 polypeptide=Lus10011529 locus=Lus10011529.g ID=Lus10011529.BGIv1.0 annot-version=v1.0 MAQRKQYGARVVFPVDLKKKPCQQDLPLHNRWHPDIPPVAEVAAGELFRVEMFDANGGHITPEFTAEDVKYADLSVQYGARVVFPIDLKKKPWDQELPLH NRWHPDIPPVAEVVTGEVFRVEMMEAHGGRITPEFTADDIKSADLSVVSSFFLLLLALMKLILSVLSFALPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	0	1
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	1.0	0.9470
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	7.3	0.8632
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042208 [exp]	8.4	0.8110
					Lus10016961 [exp]	9.1	0.8050
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	14.9	0.7977
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10011451 [exp]	15.1	0.8095
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	16.9	0.8168
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	16.9	0.8557
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	19.4	0.8562
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	20.2	0.8547

Compare expression of checked genes

Lus10011529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.