Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49940 251 / 1e-83 AS2 LBD38 LOB domain-containing protein 38 (.1) AT5G67420 238 / 2e-78 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT4G37540 231 / 8e-76 AS2 LBD39 LOB domain-containing protein 39 (.1) AT1G67100 172 / 4e-53 AS2 LBD40 LOB domain-containing protein 40 (.1) AT3G02550 169 / 2e-51 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G68510 160 / 2e-48 AS2 LBD42 LOB domain-containing protein 42 (.1) AT1G07900 58 / 5e-10 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 57 / 2e-09 AS2 LBD11 LOB domain-containing protein 11 (.1) AT3G26660 49 / 3e-07 AS2 LBD24 LOB domain-containing protein 24 (.1) AT2G40470 50 / 5e-07 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019292 [exp] 459 / 1e-165 AT3G49940 259 / 8e-87 LOB domain-containing protein 38 (.1) Lus10018697 [exp] 191 / 1e-60 AT5G67420 190 / 9e-61 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Lus10007758 [exp] 189 / 2e-59 AT3G49940 191 / 1e-60 LOB domain-containing protein 38 (.1) Lus10028470 [exp] 169 / 1e-53 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10040373 [exp] 57 / 2e-09 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1) Lus10011645 [exp] 57 / 2e-09 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10018993 [exp] 56 / 2e-09 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10040313 [exp] 56 / 2e-09 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10036130 [exp] 57 / 3e-09 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053600 [exp] 288 / 2e-98 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.005G145500 [exp] 278 / 1e-94 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.002G119400 [exp] 202 / 5e-65 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.014G017400 [exp] 201 / 8e-65 AT4G37540 196 / 4e-63 LOB domain-containing protein 39 (.1) Potri.009G089600 [exp] 192 / 5e-61 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1) Potri.001G295700 [exp] 185 / 3e-58 AT3G49940 186 / 2e-59 LOB domain-containing protein 38 (.1) Potri.004G100100 [exp] 177 / 3e-54 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.017G114500 [exp] 171 / 8e-52 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.008G120600 [exp] 166 / 1e-50 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.010G125000 [exp] 162 / 4e-49 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10011530 pacid=23140397 polypeptide=Lus10011530 locus=Lus10011530.g ID=Lus10011530.BGIv1.0 annot-version=v1.0 ATGAGCTGTAACGGTTGCAGAGTCCTCCGGAAAGGATGCAGCGAGACCTGCATCCTCCGTCCTTGCCTCCAGTGGATAGACAGCCCTGAATCTCAAGGCC ACGCCACCGTCTTCGTTGCCAAATTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTACCCGATTCCCAACGCCCTGCTTTGTTTCAATCGTT GCTGTTCGAAGCCTGCGGGAGGACAGTGAACCCAGTGAACGGAGCGGTGGGGCTGCTGTGGACGGGGAACTGGCACGTGTGCCAGACGGCGGTGGAGACA GTGCTACGCGGCGGGAGTTTACGGGCTATGCCGGAGCTGCTTGTAGCTGGATCTGGATCTGCCGATCAAGCCTCCGATGAAGCGTCGGAGGTTGGAGTTG GTTGCTCGGATATGTGGAAGCTCAGCAGTGGTGGAGGAGGTGATAATAAGGATCTGATTAGTCCGAGTAGTAATAACAATCACTGCAGGTTCTCCAGCTC CAGATCTAAGGTTTCGCCGAAGAGGAAGCGAGCTGAGCAACCGCCGATGATGACGATGAAGCTGATGACGAGGACGAGTGACCTAGATCTGCGGCTGACT CCGAGCATCTCTCCCAAGGCGGTTCCGCTCTACAAACCGGAGATCCGACGACATGGGTCGCCGTCGATGAACTCTGAAGAGTCCGGGACTACTACTTGTT TGGATAGCAGCGCCGCTCCTGGAGTGTGGCGAAACGGAGACCGAGACCATCAGTACGGCGGCCTCGTCGGAGGAGTAGGCGGGGAGAAGAAGTTGCTGAG CTTGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10011530 pacid=23140397 polypeptide=Lus10011530 locus=Lus10011530.g ID=Lus10011530.BGIv1.0 annot-version=v1.0 MSCNGCRVLRKGCSETCILRPCLQWIDSPESQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQTAVET VLRGGSLRAMPELLVAGSGSADQASDEASEVGVGCSDMWKLSSGGGGDNKDLISPSSNNNHCRFSSSRSKVSPKRKRAEQPPMMTMKLMTRTSDLDLRLT PSISPKAVPLYKPEIRRHGSPSMNSEESGTTTCLDSSAAPGVWRNGDRDHQYGGLVGGVGGEKKLLSLFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10011530 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	5.2	0.8548
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	7.9	0.8409
AT2G46940			unknown protein		Lus10009965 [exp]	8.0	0.8243
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	9.8	0.8395
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035161 [exp]	13.0	0.7951
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	13.4	0.7554
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	14.8	0.8112
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	16.9	0.7755
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	17.3	0.8095
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	17.5	0.8061

Compare expression of checked genes

Lus10011530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.