Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67390 89 / 4e-22 unknown protein AT1G69360 50 / 3e-07 Plant protein of unknown function (DUF863) (.1) AT1G26620 50 / 3e-07 Plant protein of unknown function (DUF863) (.1) AT1G13940 48 / 1e-06 Plant protein of unknown function (DUF863) (.1) AT5G57340 44 / 3e-05 unknown protein AT5G07790 43 / 0.0001 unknown protein AT5G61300 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019291 [exp] 240 / 3e-81 AT5G67390 95 / 2e-24 unknown protein Lus10011080 [exp] 124 / 1e-35 AT5G67390 91 / 7e-23 unknown protein Lus10037122 [exp] 47 / 3e-06 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10014857 [exp] 45 / 3e-06 ND 39 / 3e-04 Lus10036807 [exp] 47 / 4e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053300 [exp] 88 / 2e-21 AT5G67390 100 / 3e-26 unknown protein Potri.005G145800 [exp] 86 / 7e-21 AT5G67390 87 / 1e-21 unknown protein Potri.004G125900 [exp] 48 / 2e-06 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 45 / 1e-05 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 45 / 2e-05 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 44 / 3e-05 AT5G57340 72 / 8e-15 unknown protein Potri.017G088900 [exp] 44 / 5e-05 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.003G112000 [exp] 43 / 9e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.006G262600 [exp] 40 / 0.0005 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011531 pacid=23140389 polypeptide=Lus10011531 locus=Lus10011531.g ID=Lus10011531.BGIv1.0 annot-version=v1.0 ATGGAGAGAGTTCTCAAGCCTTATGACAAGGAATGCATGAGGCTAGCAATGCTAAAGCATGAAGAAACATTCAAAGAACAGGTATATGAACTCCACAGGC TATACAGGGTTCAGAAGCTACTGATGAGAAATCACACTGACAAAACCAACAAAAGCAGGAACACTACTACTACTAATACTAACTACAGTACTCATCAGAA GAACCACCAAGAAACTTGGAACTCTGGCTTCAGTTTCATCCCCAATAACACTACTACTACTACCACTAACCCTGAGGTCGAAGAATCAAACGGGGAACTG ATCGAGGAGTGCAATATCGAGCTTACATTAGGGCCAGCAAGTTATGCCAAGAAGAAGAGGAGGAACAACAACAACAACAACAAGGTTCCTGATGAGACAC CACCTCTGACATCAGAGTCGGCAGGACCAAGCAGCTTCTCTTCTTCGTCGACCGGGTCGAGTCAAATCAACAGGACCGAATCCGGGATGATTAAAAACCA GAATGGAAGTAGTATTAGCAATGTTGATCATAGATTAGAACAGCAGCAGCAGGCTCCTTGGTTTTTCCAGGTTTTGAGCCTTAACATGACTTGA
AA sequence Show only first row Show all	>Lus10011531 pacid=23140389 polypeptide=Lus10011531 locus=Lus10011531.g ID=Lus10011531.BGIv1.0 annot-version=v1.0 MERVLKPYDKECMRLAMLKHEETFKEQVYELHRLYRVQKLLMRNHTDKTNKSRNTTTTNTNYSTHQKNHQETWNSGFSFIPNNTTTTTTNPEVEESNGEL IEECNIELTLGPASYAKKKRRNNNNNNKVPDETPPLTSESAGPSSFSSSSTGSSQINRTESGMIKNQNGSSISNVDHRLEQQQQAPWFFQVLSLNMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67390			unknown protein		Lus10011531 [exp]	0	1
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	10.5	0.7714
AT5G45310			unknown protein		Lus10001616 [exp]	20.8	0.7625
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	26.3	0.7006
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	28.9	0.7363
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	29.5	0.7680
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003052 [exp]	37.4	0.7579
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	44.7	0.7012
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	52.7	0.7006
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	53.2	0.7355
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	60.6	0.6864

Compare expression of checked genes

Lus10011531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.