Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67385 392 / 4e-131 Phototropic-responsive NPH3 family protein (.1) AT3G49970 298 / 2e-95 Phototropic-responsive NPH3 family protein (.1) AT2G30520 231 / 5e-69 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 222 / 2e-65 Phototropic-responsive NPH3 family protein (.1) AT2G47860 207 / 5e-60 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G03010 202 / 7e-58 Phototropic-responsive NPH3 family protein (.1) AT3G08570 184 / 2e-51 Phototropic-responsive NPH3 family protein (.1) AT5G03250 165 / 1e-44 Phototropic-responsive NPH3 family protein (.1) AT5G67440 160 / 4e-43 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT5G64330 157 / 6e-42 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019290 [exp] 677 / 0 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 574 / 0 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 259 / 5e-80 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 236 / 4e-71 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 236 / 6e-71 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10025928 [exp] 231 / 4e-69 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038169 [exp] 229 / 5e-66 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040484 [exp] 216 / 2e-64 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10011290 [exp] 211 / 2e-62 AT5G64330 438 / 3e-149 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053200 [exp] 422 / 1e-142 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 233 / 1e-69 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.013G159000 [exp] 222 / 7e-66 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G139900 [exp] 221 / 4e-65 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.019G131600 [exp] 219 / 8e-65 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.002G209700 [exp] 215 / 1e-62 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 212 / 2e-61 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 179 / 3e-49 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 177 / 2e-48 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 174 / 9e-48 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10011532 pacid=23140406 polypeptide=Lus10011532 locus=Lus10011532.g ID=Lus10011532.BGIv1.0 annot-version=v1.0 ATGGTGGAAAGAGCAACTGTTCCTGTCAATAACATGTCAGAGAAGAAGGAGCTTCTTTCCTCTGCGATGAAGAGAACAGGAGAATGGATTATCTCCCAGG AAATCTCCAGTGATGTTACAGTTCATGTTGGTGGAGCTTCTTTCTCATTGCACAAGTTTCTGTTGGTGTCAAAGTCAGGCTACATAAGAAAGCTAGTGTC CGAAACCAGAGATGCTGACGTCACCGAGGTTAGAATACCTGAAATTCCAGGAGGGGTAGAGGCATTCGAACTTGCTGCGAAGTTCTGCTACGGGATCAAC TTCGAGATTGGGACGGAGAACATTGCTGTGCTTCGATGCGCAGCAGAGTATCTCGAGATGACGGAGGAGTATGCTGTTGGAAACCTGGTGTCAAGAACAG AAGCCTACCTAAATGAAGTGACTCTAAAGAGCCTGGCTAGTGCGGTTTCTGTGCTACACAGCTCGGAAAGTCTAGGAGCCATTTCTGAGAAAGTGAAGTT AGTGAACCGATGCATAGATTCCATTGCAGTTATAATCTGCAAGGAAAGCAGCCATTTTTCTATGTCAGGAAGCTCTGATGGTACCGTTGATTGGTGGGCT GAGGATTTAACTGTTCTGAGAATTGATATGCTTCAGAGGGTTCTCATTGCAATGGTGTCTAGAGGATTTAAGCAGTATGCACTTGGTCCTGTGCTTATGC TCTATGCAAAGAAGTCGCTCCGAGGTCTGGACACATTTGGCAATAAGGCGAGGAAAAAGATCGAGCCGCAACAAGAGCACGAGAAGAGGGTCGTGTTAGA AACTATAGTCAGTCTTCTACCAAAGGAGAAGAATGCATTGTCTGTCAGTTTCCTTTCCATGCTGCTCCGAGCTGCAATCTACCTCGAGTCAACCGCTCAT CCTTCCTTGAGTGACATGGAGAGGAAGAAAGTGTGCAGCGTAATGGACTGCCAGAAACTATCTCGCCAAGCCTGTGCCCACGCTGCACAGAACGAAAGGC TCCCGGTACAGACAGTGGTTCAAGTCCTTTACTACGAGCAGCAACGTCTCCGAGATGCCATGAACGTTGACCATCCCACAAGCACTCCCTCCAGGTCTCC ATTACCATTCCACTCCACAGACATCCATCCTGTTCCTGACGAGCTATCAGTGTTAAAAAGAGAGAACCAAGACCTGAAGTTCGAACTTGTCAAGATGAAA ATGAAGCTCAAGGAAATGGAGCTCAAGTTCAGCAGTGCATCTAGTAGCACTGCAAGATCCACAGTTGGAAGTTCAATGGGAATCAGCAACTCTTCACCAT CTGATAAGCCTCCTCTACCTCCTAAGAAGCCGTCATTCATTAACTCTGTATCGAAGAAGCTCGGAAAGCTTTCGCCTTTCGTGGGTGTCTTACCGTCTAA GCCTCGAACCAAACCGCCTAAAGATAGGCGCCATTCCGTATCTTGA
AA sequence Show only first row Show all	>Lus10011532 pacid=23140406 polypeptide=Lus10011532 locus=Lus10011532.g ID=Lus10011532.BGIv1.0 annot-version=v1.0 MVERATVPVNNMSEKKELLSSAMKRTGEWIISQEISSDVTVHVGGASFSLHKFLLVSKSGYIRKLVSETRDADVTEVRIPEIPGGVEAFELAAKFCYGIN FEIGTENIAVLRCAAEYLEMTEEYAVGNLVSRTEAYLNEVTLKSLASAVSVLHSSESLGAISEKVKLVNRCIDSIAVIICKESSHFSMSGSSDGTVDWWA EDLTVLRIDMLQRVLIAMVSRGFKQYALGPVLMLYAKKSLRGLDTFGNKARKKIEPQQEHEKRVVLETIVSLLPKEKNALSVSFLSMLLRAAIYLESTAH PSLSDMERKKVCSVMDCQKLSRQACAHAAQNERLPVQTVVQVLYYEQQRLRDAMNVDHPTSTPSRSPLPFHSTDIHPVPDELSVLKRENQDLKFELVKMK MKLKEMELKFSSASSSTARSTVGSSMGISNSSPSDKPPLPPKKPSFINSVSKKLGKLSPFVGVLPSKPRTKPPKDRRHSVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011532 [exp]	0	1
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	4.9	0.8977
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	7.6	0.9080
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	13.8	0.8955
					Lus10025623 [exp]	13.9	0.8806
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	14.8	0.9044
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	20.6	0.8955
AT5G15802			unknown protein		Lus10008785 [exp]	20.8	0.8668
AT5G62960			unknown protein		Lus10039964 [exp]	22.1	0.8902
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	23.2	0.8770
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	25.1	0.8755

Compare expression of checked genes

Lus10011532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.