Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37480 484 / 4e-168 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 60 / 1e-10 J20 DNAJ-like 20 (.1.2) AT3G13310 59 / 3e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 59 / 3e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 59 / 4e-09 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 58 / 1e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 57 / 2e-08 GFA2 gametophytic factor 2 (.1) AT1G28210 56 / 2e-08 ATJ1 DNAJ heat shock family protein (.1.2) AT5G03160 56 / 4e-08 ATP58IPK homolog of mamallian P58IPK (.1) AT2G22360 56 / 4e-08 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019286 [exp] 883 / 0 AT4G37480 526 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10003150 [exp] 62 / 1e-10 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002356 [exp] 60 / 3e-10 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10028453 [exp] 59 / 3e-10 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 62 / 4e-10 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10041906 [exp] 59 / 5e-10 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10036638 [exp] 61 / 1e-09 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10003149 [exp] 59 / 1e-09 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10017263 [exp] 58 / 1e-09 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052400 [exp] 511 / 4e-179 AT4G37480 564 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 66 / 2e-12 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 61 / 8e-11 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 61 / 8e-11 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 58 / 4e-10 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G122600 [exp] 61 / 9e-10 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G020800 [exp] 58 / 1e-09 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 57 / 1e-09 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G319100 [exp] 58 / 2e-09 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.005G073900 [exp] 59 / 3e-09 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10011536 pacid=23140362 polypeptide=Lus10011536 locus=Lus10011536.g ID=Lus10011536.BGIv1.0 annot-version=v1.0 ATGGCGATCTACGGCGGGATGGGAATTCGGTTAGCTTACTACATCAGCAACAATGGACCCAAAATCCTCATCCGCCGTTGCGTATTTTTACCCGGCGTCG GAATTCGGATGTTCAGCACGGCTTACGATTCGACTCGGACGGAGTTCGCCGGGGAGAACGCTTATGATATCTTGGGAGTATCGGAGACGTGCTCGTTTGC TGAGATCAAAGCTTCATTCCGGAAATTGGCTAAAGAGACTCACCCGGACCTGGCTGAATCGAACTCCGACTCCAAGGATTCATCTCTACGCTTCATTCGA GTCTCTGCAGCTTATCAGATTCTATCGGATTCTGTTAGAAGAGCTCACTACGACAGCTACCTGCTGTCTCAGAGAAAGATTGTGCAGAGGCAATCTAGTT CAGGACGAGATTCAAGGTTGCACACGTATTATAACTCGCATGGGAGTGAAGCAAGGGAGATGGAAGTTGTGGAATGGTTGAGGTGGTATAGGTCAGCCAT AAATGATATATTGGCCGAGAGAAGGGTTGCGGTTGGTACAGGTTATTTCGACGATCTTGAAGCTGATTTGTATTCGGCCATTCAAGCTGCATTTTACGGT CCTGGAATTGATTCTATGGACCTGCTTCCGGACCGTTTCGAGGCAGAGGAGAGATCTGTTTATGAAACTTTGGAGGTGTTGCATTTCGTTTCGGGAAGGG ATGTTTTCGGGATGGTTTCGATAGTGAACGATGTTCGTGAATTGTCTTCTTCTTTTACTGAGAAATTGAGTCCTGGATTTAGTATTTTGGAACTGCATCA GGCTTTCGAAAATGTGAGATCCAGTGCAGGTACCGATGGGGCTGTTAGATATTCATCTGATGTGTATAAAGATCTTGAGCTGCATGTATGTGGTTCTCTT GTTGCTGTGGCAAGTAGAATTCCTCCTAAAATCGAAGACCGTGCACTGAAGGACGAAGATCCGCAAGATGAAATACGTGTTTATCTATGTTCCAATGGCG ATTCCACCCCTGTTGCAGAATCCAGGACTCCTCTGGGGACTATAACTGGATTAGGAACTAGCCCTGATGAAGGTTCATGCTTTGTCTATGACAACTGTGG CAAAAAGACTCATGTCATAATGAAACACAGGACATTCATGGTGAAGCATATGCACTGGTATACTCTGGGGGATGATGTTTCGGTTTGTGAATGTAGATGC AGTCGAGCCCGTTTACCACCAAGCAAATTTTGGCTGTTTGAGCCTCGGTGTGGCATGCATGATATAGGAGGTTGGTATGTTGAAACATTTGGCCGGGACA AAAAGGGTTTGACTGCGGCATCACAGAGATATTGGGATGGCTGTGCTGGAGGTGATCTATATGACAAGTACGCTCTATCTTTACCAGTCTTCTGTGAAAG ATCTGTGTTATGTTTGGCAATAGGAATCATGATTCCTAGGAATGTGAAATTAGAATAG
AA sequence Show only first row Show all	>Lus10011536 pacid=23140362 polypeptide=Lus10011536 locus=Lus10011536.g ID=Lus10011536.BGIv1.0 annot-version=v1.0 MAIYGGMGIRLAYYISNNGPKILIRRCVFLPGVGIRMFSTAYDSTRTEFAGENAYDILGVSETCSFAEIKASFRKLAKETHPDLAESNSDSKDSSLRFIR VSAAYQILSDSVRRAHYDSYLLSQRKIVQRQSSSGRDSRLHTYYNSHGSEAREMEVVEWLRWYRSAINDILAERRVAVGTGYFDDLEADLYSAIQAAFYG PGIDSMDLLPDRFEAEERSVYETLEVLHFVSGRDVFGMVSIVNDVRELSSSFTEKLSPGFSILELHQAFENVRSSAGTDGAVRYSSDVYKDLELHVCGSL VAVASRIPPKIEDRALKDEDPQDEIRVYLCSNGDSTPVAESRTPLGTITGLGTSPDEGSCFVYDNCGKKTHVIMKHRTFMVKHMHWYTLGDDVSVCECRC SRARLPPSKFWLFEPRCGMHDIGGWYVETFGRDKKGLTAASQRYWDGCAGGDLYDKYALSLPVFCERSVLCLAIGIMIPRNVKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	0	1
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	2.2	0.9169
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	2.8	0.9057
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10038576 [exp]	3.3	0.8744
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	3.5	0.9081
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	3.7	0.9088
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	6.3	0.8839
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	6.6	0.8380
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	9.7	0.8945
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	9.9	0.8712
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	12.0	0.8935

Compare expression of checked genes

Lus10011536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.