Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 1030 / 0 ARA12 Subtilase family protein (.1) AT2G05920 739 / 0 Subtilase family protein (.1) AT5G51750 712 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 675 / 0 Subtilase family protein (.1) AT3G14067 662 / 0 Subtilase family protein (.1) AT4G34980 631 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 562 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 556 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 541 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 523 / 3e-175 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019285 [exp] 1358 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 1095 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 907 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 842 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 725 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 721 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 642 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 639 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 637 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145300 [exp] 965 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 947 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 930 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 740 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 727 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 710 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.003G067000 [exp] 701 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 700 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 689 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 687 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10011537 pacid=23140412 polypeptide=Lus10011537 locus=Lus10011537.g ID=Lus10011537.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCAACTCCAACACTTCCTCCATCTCCTCCTCCTCCTCCTTCTACCCTTTTCCCATCTCACGACCGCCGAGAACAAACAAACCTACATAG TCCAAACCTCCAATCACCAAATCCCCACAACAACTTCCACCTCCGCCGAATGGTACCAATCCTCCTTGAAATCAGTCTCCACAACCGCCGAACTCCTCTA CACCTATACCCACGCAATCCAGGGATTCTCCACGCGGCTCACCCCGCGTGAAGCCCAACTCCTCATCTCCCAACCGGGGATCCTCTCCGTCACCAAAGAA TCCATCTACCACCTCCACACCACCCGCTCCCCTGCTTTCCTCGGCCTCGACCTCGCCGCCGATCTCCTCCCTCAAGCCAACACTGTAGGAGAAGTCGTCG TCGGGGTCCTCGACACCGGCGCATGGCCGGAGAGCAGAAGCTACAACGACGCAGGATTCGGCCCTGTTCCGTCGACTTGGAAAGGGAAATGTGAAGTCGG AACCAATTTCACCGTTTCACACTGTAATAAGAAGCTAATCGGCGCTAGATTCTTCGCCAGAGGATACGAAGCCACAGTGGGAAGAGTGGATGAATTGAAA GAATCGAGATCTCCACGAGATGACGATGGACACGGGACGCATACTTCCACCACCGCCGCCGGATCCGCCGTCGAGGGAGCTAACCTGTTCGGATTCGCTT CCGGGACGGCTCGTGGGATGGCTACCCGCGCTAGAGTGGCGGTTTATAAAGTGTGCTGGATGGGTGGGTGTTTCAGCTCGGATATATTAGCAGCCATGGA TGTTGCGATTCAGGATGGAGTTAACGTTCTGTCGATGTCGCTCGGAGGTGGAACCTCCGACTATTACAGGGACAGCGTCGCCATTGGAGCTTTCTCTGCT ATGGAGAAAGGGATTTTGGTTTCTTGCTCGGCTGGGAATTCCGGTCCGACTTCTTACAGCTTGTCGAATGTTGCTCCGTGGATTACCACCGTCGGAGCTG GAACTATGGATCGGGATTTTCCTGCTCTGGTTAGTTTGGGGAACGGGAAGAATTACTCCGGCGTATCGCTTTATAAAGGAAGTTTGTTGAATTCGAATTC GAAGTTGTTGCCATTTGTTTACGCAGCGAATGCGAGTAACGCTACGAATGGGAATTTGTGTATGATTGGAACCCTAATTCCGGAGAAAGTAAAGGGGAAA ATCGTTCTATGTGACAGGGGAATGAATGCAAGAGCACAGAAAGGAGCTGTAGTGAAAGAAGCTGGAGGATTGGGGATGGTTTTGGCCAACACAGCAGTCA ACGGCGAGGAATTAGTCGCCGATGCTCACTTGCTGCCGACGACAGCAGTCGGTCAGAAGAACGGAGATGAAATCAAACGCTATCTGATGTCGGATCGGAA TCCGACGGCGACGATTGTGATACAGGGGACGAAGCTCGGAGTCCAGCCGTCGCCGGTGGTGGCGGCGTTCAGCTCCAGAGGGCCGAACACGATAACGCCG GATATTCTCAAGCCTGACCTCATCGCGCCAGGTGTCAACATCTTAGCTGGATGGACTGGAAACCTTGGACCCACGGGATTGGCCGCCGATCCACGGCGGG TGGAATTCAACGTTATTTCAGGGACGTCGATGTCGTGTCCTCACGTCGCCGGACTTGCTGCGTTGGTGAAGGCGGCGCATCCGGAGTGGAGCCCCGCCGC GGTGAAGTCGGCGTTGATGACAACTGCTTACGTCAGATACAAGGACGGGAAGAGGATGATTCAGGACGTGGCTACTGGGAACGACTCTACACCGTTTGAT CACGGAGCTGGACACGTGGACCCTGTATCGGCTCTCAACCCGGGGTTGATCTACGATCTGACGGCTGAGGATTACTTGTCGTTCCTCTGCGCGTTGAACT ATACAGACCTGCAGATTAACAACGTGGCGAGGAGGAACTACACATGCGACCCGAAGAAGAAGCATAGTGTGGCGGATTTTAACTACCCGTCGTTTGCGGT CAACGTGGATACGACTCAGATCGACGGTGGAGGAGGGAAGAAGGCGGCGGCGGCGGCGGCGGTGGTTAAACACACGCGGACGGTGACGAACGTTGGGGGA AGTGGAGTTTACAAGGTGTCGGTTACACCGGAGCAGATTCCCGGAGTGAAGATTATGGTGGAGCCTGAAACGCTGAGTTTTAAGGAGGCTAATGAGAAGA AGGGCTATACGGTGACATTTACAGCGAGTTCGATGGCGGTCGGGACGAATAGTTTCGCGCGGTTGGAGTGGTCGGATGGGAAACACGTGGCGGGGAGTTC GGTAGCTGTTAGTTGGAGTTAG
AA sequence Show only first row Show all	>Lus10011537 pacid=23140412 polypeptide=Lus10011537 locus=Lus10011537.g ID=Lus10011537.BGIv1.0 annot-version=v1.0 MATLQLQHFLHLLLLLLLPFSHLTTAENKQTYIVQTSNHQIPTTTSTSAEWYQSSLKSVSTTAELLYTYTHAIQGFSTRLTPREAQLLISQPGILSVTKE SIYHLHTTRSPAFLGLDLAADLLPQANTVGEVVVGVLDTGAWPESRSYNDAGFGPVPSTWKGKCEVGTNFTVSHCNKKLIGARFFARGYEATVGRVDELK ESRSPRDDDGHGTHTSTTAAGSAVEGANLFGFASGTARGMATRARVAVYKVCWMGGCFSSDILAAMDVAIQDGVNVLSMSLGGGTSDYYRDSVAIGAFSA MEKGILVSCSAGNSGPTSYSLSNVAPWITTVGAGTMDRDFPALVSLGNGKNYSGVSLYKGSLLNSNSKLLPFVYAANASNATNGNLCMIGTLIPEKVKGK IVLCDRGMNARAQKGAVVKEAGGLGMVLANTAVNGEELVADAHLLPTTAVGQKNGDEIKRYLMSDRNPTATIVIQGTKLGVQPSPVVAAFSSRGPNTITP DILKPDLIAPGVNILAGWTGNLGPTGLAADPRRVEFNVISGTSMSCPHVAGLAALVKAAHPEWSPAAVKSALMTTAYVRYKDGKRMIQDVATGNDSTPFD HGAGHVDPVSALNPGLIYDLTAEDYLSFLCALNYTDLQINNVARRNYTCDPKKKHSVADFNYPSFAVNVDTTQIDGGGGKKAAAAAAVVKHTRTVTNVGG SGVYKVSVTPEQIPGVKIMVEPETLSFKEANEKKGYTVTFTASSMAVGTNSFARLEWSDGKHVAGSSVAVSWS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	1.4	0.8973
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	5.1	0.8457
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	7.3	0.8736
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	9.5	0.8767
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	10.2	0.8415
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	12.2	0.8612
					Lus10014328 [exp]	12.2	0.8156
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	16.4	0.8046
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	16.5	0.8676
AT2G41990			unknown protein		Lus10003341 [exp]	16.5	0.8182

Compare expression of checked genes

Lus10011537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.