Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018193 [exp] 105 / 6e-27 AT1G53790 42 / 1e-04 F-box and associated interaction domains-containing protein (.1.2) Lus10020082 [exp] 92 / 8e-23 AT2G40920 46 / 4e-06 F-box and associated interaction domains-containing protein (.1.2) Lus10006742 [exp] 73 / 2e-14 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10001105 [exp] 59 / 9e-10 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10018008 [exp] 58 / 2e-09 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10023372 [exp] 54 / 4e-08 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10029725 [exp] 48 / 4e-06 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10011203 [exp] 46 / 9e-06 ND 40 / 0.001 Lus10028961 [exp] 45 / 2e-05 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006800 [exp] 43 / 0.0001 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011538 pacid=23140392 polypeptide=Lus10011538 locus=Lus10011538.g ID=Lus10011538.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGTCTACGAGAGGAGCAACGTCAAGCACCGGTAGTCAGTACTTGCCGGAGGATCTGATCATCGATATCCAACGAAGGCTTCCGCTGTCCT GCCTCCGGCGACTCTGTTGCGTAAGCAAATCCTGGAACTCTATTCTCTCGAACCCTAATTTCGTTTACGAGAGCCTCTTCTACGGTGACAATGACGACGC TAACACTCAGTTATTAATCATCAACCCCGATAACTCGGAATGTGTTTATAGTTTCTTATCCTATGATTCACTCCTCCCGTTGAACAGCGATGTTGTTTTC CACAAAGTTCCTGATGAACTTCCGCTTCCCTACCGGTTTTCTAGACCGATGTTGGCCTCCTGCGGTGGAGGTTTGATTTGCTTACAGTACGAAACGATGC CGAGAGATTCTAATTACCCAGTCCCGATTGTTGGTTTGTTTAATCCGGCCACTTCCGAGACAAAAATACTTCTTCCTCCGGCTCTGGCTCTAGATTCACT TGATAGTGACTATCAATTGTATTGGTTTCATGACTGTATTGGTGTGACTACTCTCGTCGAAAAAGACGACGGAGGAGAAGATGATCAGTGCTACCATTAT AAACTTTTACGTTGCGAGGAAAACCAGGTACCGGGTACGGGTCCGCTCTCTTGGGACGAGAAGAAGAAGAAGATCAGTACTACCGCTACAAAGCTGTTTG TGTTCGCAACTATCGAGGCGAGAGCCAGGACCGGAACAACTGGGTATCTAGACTCGTTTCGTTCGACCTGA
AA sequence Show only first row Show all	>Lus10011538 pacid=23140392 polypeptide=Lus10011538 locus=Lus10011538.g ID=Lus10011538.BGIv1.0 annot-version=v1.0 MEKMSTRGATSSTGSQYLPEDLIIDIQRRLPLSCLRRLCCVSKSWNSILSNPNFVYESLFYGDNDDANTQLLIINPDNSECVYSFLSYDSLLPLNSDVVF HKVPDELPLPYRFSRPMLASCGGGLICLQYETMPRDSNYPVPIVGLFNPATSETKILLPPALALDSLDSDYQLYWFHDCIGVTTLVEKDDGGEDDQCYHY KLLRCEENQVPGTGPLSWDEKKKKISTTATKLFVFATIEARARTGTTGYLDSFRST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47340			F-box and associated interacti...		Lus10011538 [exp]	0	1

Compare expression of checked genes

Lus10011538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.