Plant FIBer expression Database

Lus10011541 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49890 121 / 5e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019282
[exp]
209 / 6e-68 AT3G49890 166 / 9e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G172500
[exp]
143 / 3e-42 AT3G49890 156 / 1e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10011541 pacid=23140437 polypeptide=Lus10011541 locus=Lus10011541.g ID=Lus10011541.BGIv1.0 annot-version=v1.0
ATGGGAGGCTCACTGAGGACCGACGACATCAGCAGCAGCAGCAGCGAGGAAGAAGATGCGGAGTGGAAAGCAGCCATCCATTCAGTTGCTTCAACCACCA
CTTTCGCCGGTTCTTCTCTGTCCAACGGCTCAACAAAATCTCATCGCGAGAACGGCGCCGCCGACGAACAGCCGCGCGATTCCAAGAAGCTGAAGCTCTA
CCAGATTAAAGCACAAAGAGTATTGGACGAACTTCTGGAGAAATCCCTGGATTTCGTGGAGTATGATGTCAAGCTACCAGATGTTGAGCCGGTGGAAGAT
GAAGGTGGAGTACGGTTATTCAAGAACTCCAAAGCAGGGATTTCATTAAATAAAGCTGAGATTCAACGGCCTACGAAGAAACCGAGACTCGTTCCTGAAC
TTACGATTGAAGAGGATTCAAAGAAGTTCAGAAGAGCAGTGAAATCGATAGCTGTGGATGGATCGGAGATAATTGCTGTAGCGAACAATGTAGCTCGAAG
AGCATTGGCTAGAGTGGAAGCTAGAGAAGCAAGAGCGAAAGAGAAGGCGAAGAAGGAAGAGGAAAGGGTTGCTGAGCTTAAGAAAATCAGGGGAGAGAAA
TGGCTGCCTGCTATTGCCAAGGAAATGCAGGTAAAAGCTTTTGAAACATCTTCAGTTTGA
AA sequence
>Lus10011541 pacid=23140437 polypeptide=Lus10011541 locus=Lus10011541.g ID=Lus10011541.BGIv1.0 annot-version=v1.0
MGGSLRTDDISSSSSEEEDAEWKAAIHSVASTTTFAGSSLSNGSTKSHRENGAADEQPRDSKKLKLYQIKAQRVLDELLEKSLDFVEYDVKLPDVEPVED
EGGVRLFKNSKAGISLNKAEIQRPTKKPRLVPELTIEEDSKKFRRAVKSIAVDGSEIIAVANNVARRALARVEAREARAKEKAKKEEERVAELKKIRGEK
WLPAIAKEMQVKAFETSSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49890 unknown protein Lus10011541
[exp]
0 1
AT4G18470 SNI1 SUPPRESSOR OF NPR1-1, INDUCIBL... Lus10025429
[exp]
5.0 0.8184
AT5G56940 Ribosomal protein S16 family p... Lus10025984
[exp]
8.1 0.8117
AT5G27430 Signal peptidase subunit (.1) Lus10001092
[exp]
9.1 0.7448
AT1G61000 unknown protein Lus10012690
[exp]
14.6 0.8019
AT3G20070 TTN9 titan9 (.1.2) Lus10026248
[exp]
18.7 0.8132
AT1G53330 Pentatricopeptide repeat (PPR)... Lus10036019
[exp]
21.8 0.7742
AT3G48540 Cytidine/deoxycytidylate deami... Lus10022452
[exp]
21.8 0.7941
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Lus10010745
[exp]
23.1 0.7883
AT5G02610 Ribosomal L29 family protein ... Lus10025292
[exp]
25.7 0.7793
AT2G24970 unknown protein Lus10020094
[exp]
29.5 0.7796

Lus10011541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.