Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67540 617 / 0 Arabinanase/levansucrase/invertase (.1.2) AT3G49880 616 / 0 glycosyl hydrolase family protein 43 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019280 [exp] 769 / 0 AT5G67540 603 / 0.0 Arabinanase/levansucrase/invertase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148800 [exp] 709 / 0 AT3G49880 650 / 0.0 glycosyl hydrolase family protein 43 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [flax] [poplar] B_Fructosidase PF04616 [flax] [poplar] Glyco_hydro_43 Glycosyl hydrolases family 43
Representative CDS sequence Show only first row Show all	>Lus10011543 pacid=23140371 polypeptide=Lus10011543 locus=Lus10011543.g ID=Lus10011543.BGIv1.0 annot-version=v1.0 ATGAGGATGAAGAACAAATCCAGAAAACCAACTACTTTCCCTTGCAATGCAGGGATAAGTAGATGCTCAACGACTTCCGCCATTGTATGGATCTTGGTGG GGCTAATCCTCTGCCTTCATCTCTACAGTCTAGTTGGAAACAATGGTGGTAATGGTGGAAATGGTAATGGTGCAGTAAGTGTGAAATTCGGTCATGTAGC ACGCCACCGAGCTCTCTTTCGTGAGCTGGAGGAGGTGGAAGAAGAGAATCTGGCGATTCCTCCACCGAGGGGGAAGAGATCTCCGCGAGCTGCAAAGAGG AGGCCTAAGAAGCCGACCACATTGATCGAAGAGTTCCTCGATGAGAATTCTCAGCTCCGGAACGTGTTCTTTCCGGGGATGAAGACTGCGGTTGATCCTG TGAAGGATGGTGGGAATGGGAGCTTGTATTATTACCCCGGGAGGATTTGGTTGGATACGGAAGGGAATCCGATTCAAGCTCATGGAGGCTGCATTCTGTA TGATGAGAGGTCGGAGATGTATTACTGGTATGGAGAGTATAAAGATGGACCGACGTACCATGCTCACAAGAAAGGCGCAGCACGGGTTGACATCATAGGA GTTGGTTGTTATTCCTCCAAGGACCTATGGACATGGAAGAACGAAGGCATCGTGTTGCAAGGAGAGGAAACAGACGAAAGCAACGATCTTTTTAAAACAA ATGTCCTTGAGAGGCCGAAAGTAATCTACAACGACAGAACACGAAAGTACGTAATGTGGATGCATGTAGACGATACAAACTACACAAAAGCATCCGTCGG CATTGCCCTTAGCGACTACCCGACTGGTCCTTTCGACTATGTAGGCAGCAAAAGACCACACGGGTACGAGAGCAGGGACATGACTCTCTTCAAAGACGAC GACGGTACAGCGTACTTAGTGTACTCCTCGGAGGACAATAGCGAACTCCACATCGGACCCCTCACAGCAGACTTTCTTGACGTTACTTCTGTAGTCAGAA GGGTACTCATAGGCCAGAAACGCGAAGCTCCAGCGCTGTTTAAGCACGAGGGGACTTACTACATGATCACCTCGGGTTGCACCGGTTGGGCACCGAACGA GGCTTTCGCTCATGCGGCCGATTCGGTCATGGGTCCGTGGGAGACCATGGGGAACCCCTGCGTTGGAGGGAACAAGATGTTCCGCCTCGCAACGTTCTTT TCTCAGAGCACGTTCGTGATCCCGATAAGGGGCATTCCCGGTTCATTCATTTTCATGGCGGACCGGTGGAATCCAGCCGATTTGAGGGACTCGAGGTACG TGTGGCTGCCTATGATAGTCGGAGGGGTTCCTGATCAACCACTTGATTACAATTTCGGGTTTCCGTTGTGGTCGAGAGTTTCGATCTATTGGCATAGAAA GTGGAGGCTTCCAACTGGTTTGAGTGAGCTGAAATAA
AA sequence Show only first row Show all	>Lus10011543 pacid=23140371 polypeptide=Lus10011543 locus=Lus10011543.g ID=Lus10011543.BGIv1.0 annot-version=v1.0 MRMKNKSRKPTTFPCNAGISRCSTTSAIVWILVGLILCLHLYSLVGNNGGNGGNGNGAVSVKFGHVARHRALFRELEEVEEENLAIPPPRGKRSPRAAKR RPKKPTTLIEEFLDENSQLRNVFFPGMKTAVDPVKDGGNGSLYYYPGRIWLDTEGNPIQAHGGCILYDERSEMYYWYGEYKDGPTYHAHKKGAARVDIIG VGCYSSKDLWTWKNEGIVLQGEETDESNDLFKTNVLERPKVIYNDRTRKYVMWMHVDDTNYTKASVGIALSDYPTGPFDYVGSKRPHGYESRDMTLFKDD DGTAYLVYSSEDNSELHIGPLTADFLDVTSVVRRVLIGQKREAPALFKHEGTYYMITSGCTGWAPNEAFAHAADSVMGPWETMGNPCVGGNKMFRLATFF SQSTFVIPIRGIPGSFIFMADRWNPADLRDSRYVWLPMIVGGVPDQPLDYNFGFPLWSRVSIYWHRKWRLPTGLSELK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67540			Arabinanase/levansucrase/inver...		Lus10011543 [exp]	0	1
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	3.7	0.9296
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	4.9	0.9194
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	7.3	0.9275
AT5G08060			unknown protein		Lus10021149 [exp]	11.4	0.9073
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	13.0	0.8813
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	13.6	0.9184
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	13.7	0.8948
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	16.9	0.8979
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	17.3	0.9017
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	19.0	0.9230

Compare expression of checked genes

Lus10011543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.