Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67550 332 / 2e-108 unknown protein AT2G25270 123 / 6e-30 unknown protein AT1G71110 111 / 7e-26 unknown protein AT2G12400 93 / 7e-20 unknown protein AT1G80540 74 / 6e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001945 [exp] 124 / 4e-30 AT2G25270 650 / 0.0 unknown protein Lus10025583 [exp] 109 / 3e-25 AT5G67550 174 / 1e-47 unknown protein Lus10007962 [exp] 101 / 8e-23 AT1G71110 578 / 0.0 unknown protein Lus10013492 [exp] 99 / 5e-22 AT1G71110 645 / 0.0 unknown protein Lus10014341 [exp] 98 / 2e-21 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 96 / 5e-21 AT2G25270 328 / 4e-107 unknown protein Lus10001929 [exp] 90 / 9e-19 AT2G25270 457 / 3e-156 unknown protein Lus10008028 [exp] 79 / 2e-15 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 76 / 2e-14 AT2G12400 616 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G023400 [exp] 195 / 4e-56 AT5G67550 182 / 3e-51 unknown protein Potri.007G132601 [exp] 189 / 5e-54 AT5G67550 189 / 8e-54 unknown protein Potri.018G023200 [exp] 112 / 2e-26 AT2G25270 595 / 0.0 unknown protein Potri.018G120200 [exp] 111 / 5e-26 AT2G12400 596 / 0.0 unknown protein Potri.010G115500 [exp] 109 / 3e-25 AT1G71110 646 / 0.0 unknown protein Potri.006G060600 [exp] 104 / 1e-23 AT2G12400 579 / 0.0 unknown protein Potri.006G258700 [exp] 101 / 1e-22 AT2G25270 590 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011544 pacid=23140400 polypeptide=Lus10011544 locus=Lus10011544.g ID=Lus10011544.BGIv1.0 annot-version=v1.0 ATGGTTTCCCTCAAATCTTCTTCAGTCGTCGTCTTCGTCGTTCCGATTCTGTTTCTTATAGCGTTCATGGCTGGATCAGTGGCCGGAGATCAGGAGCGGT TCCGACGACCGGATCCTATGCACGGGTTGAAGGATTACGTCGGGACGTACAATGTCACCGACGAGCACTATTGGGCCTCTGCGGCATTTACAGGAGTGCA TGGCTACGTGACTGCTGCAGTGTGGGTCCTGTGTGGGGTGGGCTTAGGAATCTTTTGGGCTTTGAAAAATGGAGGCCCATACTTTGCATCCATTAGGGAC TTTTTGGACTATTACCACCTCCCCATGTTCTTCCTCCTCCTCATCTTCACTGTCCTCGCTTTGGCGTCAACCATAATAGTTGCAATAGCAAACCAGAGCT CGCTGCACAGAACAGAGGACATGAAGCAAACCGTGATAAAGATGGCTAGGGACACTCACCGGACTATCCAAAAGGTGGTTTTGGCAATGTCGACAATCCA GAGCCTGCTCCGCCCTTACCAGCCCGATGCTTCCCTAAAGTTGTACAACATAACTCACATGCTAGCCGACGATTCCAAGACCATTAAGGACTATGTCGCG AGTAGTGGCGGCTCGATGGACTTTGCAATCCACACTTCGCATATGGTACATTTGGTTGTGGTCGTTGTCAATTTGGCCTTCTTGGTGGCTTCCATAGTTG TGCTCCTCCTGCATTGGCACCCTGGATTCATTTTAATAATTTTGACATTTTGGATCCTAACAGCAATGTACTGGGTTTTGACAGGCATCGACTTCTTCCT CCACACTTTTGCTGAAGATACATGCCATGCATTCGAAAGCTTTGTGGAGAACCCACATAACAACGCACTGAGCTCTATAATACCTTGCATGGACACCCCT GAAGCCCTTCAAGTCCTTGCTGAAATTGGTGGCACCATCCATGGCTTCATTTCCGAGTTAAACTCCAAAATGACTTCGGTGAACTTGGGGTTTATACAAG AAGCAAGATTCATGGGAATCAAAGGAATATGCGACCCTTTCTCAGGACCACCAACCCAAATCTTCTTGCCAAATAACTGCGCCAAAGGTTTCATCCCAGT TGGTGAAATCACCAATATGCTATCAACATTGACGTGCCCTGAAGCATCAACCCACGAGGAATGCGCAACACAGGGCAAAATCATACCGGAGAGCATCTCG AAGATGGCTGTGGCTTACAGCCGCTCAACTCAATTGGCAATAGATGCGTTCCCCAACTTGGAAGCCCTCGCCCAGTGCAAGCTGGTGAAGCAGACCATGA CCCACATTGTCGAGGAGCGGTGTGGGCCCTTCGAGGTCGCGATGTCGATGTTGTGGACCTCGATGCTATGCGTCTCGATATTCATGACCGTGTTCGTTCT GGGATGGGTCATCAAGAGCTATCAGGAACGAGACCGGCGGTTCTCTGCTTGTTCCATTTGGCCCCACCGGAGGGATCAAACGTAA
AA sequence Show only first row Show all	>Lus10011544 pacid=23140400 polypeptide=Lus10011544 locus=Lus10011544.g ID=Lus10011544.BGIv1.0 annot-version=v1.0 MVSLKSSSVVVFVVPILFLIAFMAGSVAGDQERFRRPDPMHGLKDYVGTYNVTDEHYWASAAFTGVHGYVTAAVWVLCGVGLGIFWALKNGGPYFASIRD FLDYYHLPMFFLLLIFTVLALASTIIVAIANQSSLHRTEDMKQTVIKMARDTHRTIQKVVLAMSTIQSLLRPYQPDASLKLYNITHMLADDSKTIKDYVA SSGGSMDFAIHTSHMVHLVVVVVNLAFLVASIVVLLLHWHPGFILIILTFWILTAMYWVLTGIDFFLHTFAEDTCHAFESFVENPHNNALSSIIPCMDTP EALQVLAEIGGTIHGFISELNSKMTSVNLGFIQEARFMGIKGICDPFSGPPTQIFLPNNCAKGFIPVGEITNMLSTLTCPEASTHEECATQGKIIPESIS KMAVAYSRSTQLAIDAFPNLEALAQCKLVKQTMTHIVEERCGPFEVAMSMLWTSMLCVSIFMTVFVLGWVIKSYQERDRRFSACSIWPHRRDQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67550			unknown protein		Lus10011544 [exp]	0	1
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	2.2	0.9660
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	3.2	0.9608
AT1G14730			Cytochrome b561/ferric reducta...		Lus10019135 [exp]	3.9	0.9588
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	4.0	0.9575
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	4.5	0.9559
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	6.0	0.9491
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	6.9	0.9531
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	7.3	0.9543
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	8.4	0.9543
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	8.8	0.9474

Compare expression of checked genes

Lus10011544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.