Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67560 243 / 9e-84 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT3G49870 242 / 1e-83 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G37680 231 / 2e-79 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49860 195 / 5e-65 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT2G24765 87 / 6e-23 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G62290 86 / 4e-22 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G23490 86 / 4e-22 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 86 / 4e-22 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 86 / 4e-22 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G47170 86 / 5e-22 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 258 / 8e-90 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 255 / 1e-88 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 255 / 1e-88 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10031436 [exp] 86 / 6e-22 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 86 / 8e-22 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 86 / 2e-21 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 86 / 5e-21 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 86 / 1e-20 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10014991 [exp] 83 / 1e-20 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293100 [exp] 252 / 2e-87 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.009G087400 [exp] 250 / 7e-87 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.017G130500 [exp] 231 / 4e-79 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.004G086200 [exp] 231 / 5e-79 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.018G013700 [exp] 90 / 2e-23 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 89 / 4e-23 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 88 / 6e-23 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 88 / 6e-23 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.005G142100 [exp] 87 / 2e-22 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 87 / 3e-22 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10011545 pacid=23140366 polypeptide=Lus10011545 locus=Lus10011545.g ID=Lus10011545.BGIv1.0 annot-version=v1.0 ATGGGGTTGTGGGAAGCTCTTCTCAATTGGCTCCGCAGTCTCTTCTTCAAGCAGGAGATGGAGCTGTCCCTGATAGGACTTCAAAACGCCGGGAAGACTT CTCTCGTCAATGTTGTTGCTACTGGTGGATATAGTGAAGACATGATCCCAACGGTGGGATTCAACATGAGAAAAGTAACAAAAGGCAATGTCACCATAAA GTTGTGGGATCTTGGAGGTCAACCTAGGTTCCGCAGTATGTGGGAGCGATATTGTCGTGCAGTTTCGGCTATAGTTTACGTGGTCGATGCTGCTGATCAC GACAACTTGAGCATCTCAAGGAGTGAGCTCCATGACTTGTTGAGCAAACCATCACTTAGCGGCATCCCGTTATAA
AA sequence Show only first row Show all	>Lus10011545 pacid=23140366 polypeptide=Lus10011545 locus=Lus10011545.g ID=Lus10011545.BGIv1.0 annot-version=v1.0 MGLWEALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADH DNLSISRSELHDLLSKPSLSGIPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	0	1
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	1.7	0.8325
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	3.2	0.8257
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10025176 [exp]	6.0	0.8241
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	17.3	0.7804
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10036478 [exp]	18.5	0.7952
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	21.8	0.7191
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	24.0	0.7976
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	24.6	0.7771
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	25.0	0.7715
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	28.2	0.8139

Compare expression of checked genes

Lus10011545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.