Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37670 764 / 0 NAGS2 N-acetyl-l-glutamate synthase 2 (.1.2) AT2G22910 764 / 0 NAGS1 N-acetyl-l-glutamate synthase 1 (.1) AT5G67610 344 / 5e-108 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) AT3G49840 290 / 4e-88 Uncharacterized conserved protein (DUF2215) (.1) AT1G28760 198 / 9e-55 Uncharacterized conserved protein (DUF2215) (.1) AT3G57560 50 / 5e-06 NAGK N-acetyl-l-glutamate kinase (.1) AT2G22905 42 / 0.0004 Expressed protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019262 [exp] 962 / 0 AT4G37670 799 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10012093 [exp] 875 / 0 AT2G22910 813 / 0.0 N-acetyl-l-glutamate synthase 1 (.1) Lus10019263 [exp] 743 / 0 AT5G67610 441 / 2e-151 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Lus10034420 [exp] 219 / 7e-62 AT1G28760 413 / 8e-141 Uncharacterized conserved protein (DUF2215) (.1) Lus10019140 [exp] 134 / 4e-33 AT5G67610 320 / 6e-105 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Lus10030889 [exp] 51 / 3e-06 AT3G57560 450 / 1e-159 N-acetyl-l-glutamate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G005000 [exp] 842 / 0 AT4G37670 825 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.007G005300 [exp] 832 / 0 AT4G37670 847 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.007G005500 [exp] 474 / 2e-157 AT5G67610 400 / 1e-135 Uncharacterized conserved protein (DUF2215) (.1), Uncharacterized conserved protein (DUF2215) (.2) Potri.013G064800 [exp] 218 / 2e-61 AT1G28760 416 / 2e-141 Uncharacterized conserved protein (DUF2215) (.1) Potri.019G039300 [exp] 180 / 7e-50 AT1G28760 320 / 1e-106 Uncharacterized conserved protein (DUF2215) (.1) Potri.006G280100 [exp] 63 / 4e-10 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1) Potri.018G001600 [exp] 63 / 5e-10 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1) Potri.014G003451 [exp] 58 / 6e-10 ND / Potri.019G039401 [exp] 46 / 5e-06 AT1G28760 44 / 2e-06 Uncharacterized conserved protein (DUF2215) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family CL0257 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family CL0257 [flax] [poplar] PF10225 [flax] [poplar] NEMP NEMP family
Representative CDS sequence Show only first row Show all	>Lus10011548 pacid=23140404 polypeptide=Lus10011548 locus=Lus10011548.g ID=Lus10011548.BGIv1.0 annot-version=v1.0 ATGGGTTCTGCAAAAACCGCTCGGAGCTCCGTTTGCATCTTCTGGGTTCTCTTGCTTTGCTCTTTCCCGTTCTTCGCGTCCTTCGCTTTCGCCACTGCAT TAGATATTAGTGAAAGCTCTAGACTCAATGTGACTCCTAGCTTGCCTGTGGTGAACTCCCCTGGGACGAAGCCTGGGACTAGGCTGCTTTGTGAAAGAGT TCGTATCGATGGGTTACATAGGCTTAAGAACTTGAAGAAGTTTTCACACTCGTTGAAGCTGAACCTTACGCATACTAGCTCCACTCTCCGTGGCCCAAGT GTTGAAGTTTGTTTCCACAGGAATTCATCCGTTGGAGTTGGGATGTGTTCGAAAGGAAAGTGGGAGAAAGTTGTTAAGGGCAAATGGGGTCGTGCTATGT CACCTTTTGATCATAAGCTCCTGGATATAAGGATGTCTGGTTCATCCCCTGAAAACTTTGAACTTCACATTGAAGAAGAATTTTTCTTGTATCGGATCGT ATTCCTAGTAGCTGGGATCTTTATGTTGAGCATGGCATCCCCTTTGAGCGAGTCGTTAACGTTTTACTACTGCAGTGGCATGGCACTTGGCATCATCCTT GTAATATTGGTGGTGCTTTTTCAGGGGATGAAAATTTTGCCAACTGGTCGGAGGAACTCACTTGCGATTGTCATATACGCATCTTTGGTTGGTTTGGGAT CTTTTCTCCTGCAATACGTGCCAAACTTATTGCAGTCACTCCTCCTTGAGATGGGAATCAGCGAAGACCTGTATTTTCCTGTATTTTTTCTGGTGGCTTT TATTGTTCTCGCTGGAGCGTGGATGGGATTCTGGGCTGTGCGGAAACTTGTCTTGGCAGAAGATGGATCAGTTGACACTAGTACTTCCATTTTTGTTGCC TGGTCTATCAGGATTGTTGCTTGTATTATGATTCTTCAGAGCTCATTGGATCCGCTGCTAGGAGCAGGGGCATTACTATCAGGAATTATTCTCTCATCGA TGTTGAAGAGAACTTTCCGATTGGAATTTTGGCGGCGGCTCTACACGGGGTTGCTCAATTTGGTGGACAACATTAGCTCGAAGTCTGACATTCCTGATCT ATCTCCGTTCCAGAATCCTCATGAAAAGTACACATACAGAACTCCTGAAGATTCTCAGCCTATCTGGCCCCGGCCCAAGAGATTCAGTTCTCCTATTCAA GATAACAAAACGTCTCCAGCATCAGATTCAGGTGTGTTCCTTTCCACCTTCTGCACTCCAGAGAAGAGGACGAAATTCTCCCAGGAAGAGTGGAAAAGGA TCACCAAAGACTCAACACAGAAGGCGGTGAAAGAACTCGTCGGTTCCCCCGATTTCAGCAGATGGGTTGCTGCAAACGCTGATCGAATCTCTGTAACTCC AAAGTCCTCGCGGAAGGAGGCTCCTCCGTCCGTCAAAGGTAGGGACGGCCTGAGGAAAGCGAGCGACGGTGATTATTCCAATCCAGTGGAGGAAGAGGAG CAGTTCGTGAGGTGGTTTCGAGAAGCTTGGCCTTATCTGTGGGCTCATCGTGGGAGTACTTTTGTGGTTGTTATCTCTGGTGACATTGATGCCAGCTCTT ACTTGGACCCAATTCTTAAGGATATAGCATTGCTTCATCACCTTGGAATCAGGTTCGTGATTGTTCCAGGGACTCATGTTCAAATCGATGATCTTTTGGC TGAGAGAGGGCATGAGCCTAAGCATGTTGGTCCATATAGAATAACTGATCCAGAAGCTCTATCTGCATCAATGGAGGCGGCTGGAAAAATTCGAATGATG ATAGAGGCTAAGCTTTCTCCGGGACCTTCCATATGCAAGCGATTTTCTCTAAGTTCATTATGGTTTTGTTTACAGAGACGAGGAGTTGTTGGCGGTGTTG ATTTTGGGGCAACCGGTGAAGTGAAGAAAGTAGACGTCGATCGTATGAGTGAGAGGCTTGATAGTAGTTGCATAGTTGTGCTGAATAACTTGGGGTATTC GAGCTCCGGCGAAGTTCTGAATTGCAACACATATGAAGTTGCTACAGCTTGTGCGTTAGCAATTGGTGCAGATAAGCTGATATGCATCATGGATGGTCCC ATTCTTGACGAGAATGGGCATCTCATTCGTTTCTTAACTCTTGAAGAAGCAGACACATTGATTCGTGAGCGGGCTAAGCAAAGTGAGGTAGCTGCTCATT ATGTCAAGGTGGTTGCAGAAGAAGACCCCTCTTTTGTCGAAGACACCGATTCCATCTCATTAGTTGCCAAAGATAATGCGACATTTCACAATGGAGTTGG CTTTGGCAACGGCAGTGGTCTGTGGTCAGGAGAACAAGGTTTTGCAATTGGTGGACAGGAAAGACTTAGCCGATCACAAGGATATCTTTCGGAATTGGCT GCCGCGGCTTTTGTTTGCAAGGGTGGTGTGCAAAGAGTACATCTATTAGACGGTACAATCGGTGGGGTTTTACTGTTAGAACTCTTTAAAAGAGATGGAA TGGGAACTATGGTGGCTAGCGACCTATACGAAGGAACCCGTATGGCTAGGGTGTCTGACCTTGCCGGGATAAAACAGATTATACAGCCTTTACAAGAAGC AGGCGTATTGGTCAAAAGGACCGATGAAGAGCTGCTTAAAACATTGGGTTCATACATTGTGGTGGAAAGGGAAGGTCAAATCATTGCTTGCACTGCACTC TTCCCTTTCTTTGAAGACAAGTGTGGAGAGGTTGCTGCAATTGCAGTTTCTTCGGATTGCCGTGGACAAGGCCAAGGAGACAAATTATTAGATTATATCG AGAAGAAGGCATCTTCACTGGGATTGGAAATATTGTTCCTTCTTACTACTCGTACAGCGGACTGGTTTACAAGACGCGGGTTCTCAGAGTGTTCGATCGA GATGATACCGGAACAGAGGAGGAAGAAGATCAATCTGTCGCGGCACTCGAAATACTATATGAAGAGATTGCTTCCTGATACAAGTGGGATTACTCTAACT GCCCAGCAATCTAGCTGGCAATAG
AA sequence Show only first row Show all	>Lus10011548 pacid=23140404 polypeptide=Lus10011548 locus=Lus10011548.g ID=Lus10011548.BGIv1.0 annot-version=v1.0 MGSAKTARSSVCIFWVLLLCSFPFFASFAFATALDISESSRLNVTPSLPVVNSPGTKPGTRLLCERVRIDGLHRLKNLKKFSHSLKLNLTHTSSTLRGPS VEVCFHRNSSVGVGMCSKGKWEKVVKGKWGRAMSPFDHKLLDIRMSGSSPENFELHIEEEFFLYRIVFLVAGIFMLSMASPLSESLTFYYCSGMALGIIL VILVVLFQGMKILPTGRRNSLAIVIYASLVGLGSFLLQYVPNLLQSLLLEMGISEDLYFPVFFLVAFIVLAGAWMGFWAVRKLVLAEDGSVDTSTSIFVA WSIRIVACIMILQSSLDPLLGAGALLSGIILSSMLKRTFRLEFWRRLYTGLLNLVDNISSKSDIPDLSPFQNPHEKYTYRTPEDSQPIWPRPKRFSSPIQ DNKTSPASDSGVFLSTFCTPEKRTKFSQEEWKRITKDSTQKAVKELVGSPDFSRWVAANADRISVTPKSSRKEAPPSVKGRDGLRKASDGDYSNPVEEEE QFVRWFREAWPYLWAHRGSTFVVVISGDIDASSYLDPILKDIALLHHLGIRFVIVPGTHVQIDDLLAERGHEPKHVGPYRITDPEALSASMEAAGKIRMM IEAKLSPGPSICKRFSLSSLWFCLQRRGVVGGVDFGATGEVKKVDVDRMSERLDSSCIVVLNNLGYSSSGEVLNCNTYEVATACALAIGADKLICIMDGP ILDENGHLIRFLTLEEADTLIRERAKQSEVAAHYVKVVAEEDPSFVEDTDSISLVAKDNATFHNGVGFGNGSGLWSGEQGFAIGGQERLSRSQGYLSELA AAAFVCKGGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRMARVSDLAGIKQIIQPLQEAGVLVKRTDEELLKTLGSYIVVEREGQIIACTAL FPFFEDKCGEVAAIAVSSDCRGQGQGDKLLDYIEKKASSLGLEILFLLTTRTADWFTRRGFSECSIEMIPEQRRKKINLSRHSKYYMKRLLPDTSGITLT AQQSSWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	0	1
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10035216 [exp]	9.5	0.6767
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	9.8	0.6920
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	11.1	0.7381
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	37.5	0.6308
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	44.3	0.6719
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10023000 [exp]	45.0	0.6915
AT2G18210			unknown protein		Lus10025998 [exp]	67.0	0.6769
AT1G11340			S-locus lectin protein kinase ...		Lus10018402 [exp]	78.4	0.6828
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	87.9	0.6899
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	118.4	0.6569

Compare expression of checked genes

Lus10011548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.